Gene detail

Detail information of GWHGAAEX018953/evm.TU.scaffold_99.172

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4573	3.00E-107	Phosphoprotein involved in cytoplasm to vacuole targeting and autophagy
nr	gi\|672145856\|ref\|XP_008796859.1\|	0	PREDICTED: autophagy-related protein 13-like isoform X1 [Phoenix dactylifera]
trEMBL	tr\|K4BJ97\|K4BJ97_SOLLC	1.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g096790.2.1}
TAIR	AT3G49590	3.00E-107	Autophagy-related protein 13

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	3319129	3364709	-

Transcript Sequence
>GWHTAAEX018953 TAAAGAAATGTCGCTGCAAAATTACCGCCACACAGTGTACCCACACACAATCTTCTCCGCCGCTCAAACCCCCTTTCTTACACGATGGCTATGCTCTCACGCATCACAATAAATTAGCTTCCGTCTCATCTTGTTGGAACCATTCCGCCCTTCGTCCCCCTTCCATGAAGTCTCCCTTCCACGCTCTTCACGCATCTCTGATCACCTCTTAGATCTATCAACAACACTTTTATATATCCTCCATGGATCCCGTATTCCTGTCCGATCCCGATCTCCCCACATCTTCCCCAGCCTTCGTTGCACCGACGCCGCCGTCCTCCTCAGAAGAGGGCCGTCCATTTTCCGGCGTCGCCGCAGATTTGTTTTCCGCCGCTTGACTGCTGCAAGCCGTCGCCGATCATGGCGCATAATCAGTCAGATGCCAGTCGCACTGAGCAGATCATCTCCGAGTTCTTTCTTAAGACCCTACATGCCGTCGTCTCATCCAGGATCCCCCACCTCACCGGTACCGGTGGCACCGTCCGTGTGCGGAGGCGCGATCGTTGGTTCAACCTTGCTATTGGCGATCTCCCGCCTGCCCTGGAGAATCCTGGGCTCTGGCACTACGGCGTCATGGAGCCGATGATCGTCGACGTCATTCTTTCCCCTCGCGATGGCGCTGAATCGGAGGCCGTCATTGAACGATGGACAACGCAGTGCGAGGCGACTCCGCAGTGGAATGACAGCACGTCGTCGCCTCCGCCTTCATCTGCTTCCTTTTACAGAAGGACATACAAGAAGTCGATTCTACTCCTACGGTCCATTTACTCCCTCCTCCGGTTTCTCCCCGCTTACAGGGCTTTCAGACTGCTTACCTCTTCCAGCCAATCTTCCAACTACTATTTGAACTATAGGGTTTCGTCTTTCGCCGAGCCATTATCTCGGGAGGAAGAGAAGGGATTCAAGCTGCAGACATTCCCGCATGTGGAAAGTCAATTGGGTCATCTTTCCGTTTCGGTTCTTTATCGTCCAACTCTTGAGAAGTTCAATTTAGAGGTTTCGTCCTTGTTGCCGCCTATGATAATAGCGGATTATGTTGGTAGCCCAGCTGCCGATCCGATGAGAGCTTTTCCGGCTTCGCCGTCGGGGAAGGGCATGCGACCAATATCTTACCCCTTGCGCGGTGTGCGGACGTTGTCGGCGCCGGTTATTCAGCGGCCGCATACCTGGTCCACCGCTCCTATGACACATCATCCCCTGCACGCTTTTGTGGATGCAGTTCCTGAGCATCGAGTCTCTCCGCCTGATTATTTTGGGAAGCGAATGGTAGCTCCTCGGCAATCTGGTCAGAGGAAGAGTAGCTTTAGCTTTGAGGAGTACCGGCTGTCCCCTCCGTTCTCTGTGTCTCCTACTCCATCTCCGCCTGCCTATACGGCTAATGCTTTCCAGGCGAGATTGCCATCGGAAACTGCTCCAGTTAGCATACCGCAGCCTGTGATGGGAAAGAACCTTTTACAGCGTACTCCTAACTTTTCTGATCCCACTAGAAGCTTGCTGCCGCCTCCGTCACCAAGGAGTGCGCGGGCTGATGTGTCTTACGAGGAGTCTCCATCCACTAGCAAATCCTTTAGGAAGTTGGATGCACTGAAGGCAGGGGAGCTTCACTCACTTCTGTACATGGCTCCCAAGGCGCTTAAAGATGCTAAAGATGATTCAGGACGGTTTTCTAGCGTTCTTTCTTCTGGTGGTTCACCGAGGTTTGTCATCTCAAGGAGTTCAAGTAGAAAGTCTATGCAGGATGACCTTGAGGATTTAGATTTTTCTTGTCCTTTTGCTGTGGATGATGTTGATACTTCTGAATCTCAGTCGAGGAACGCGCACGACGGCAAAGATGCGTCCGAGTTTGCTTCTCAAGCATCGCCGCACAGATCACAGGATGCAGCGGTCGGAGCTCTCGTCCACATGCTGAGGACTGCGCCCCCTCTGCGCCAGGATCACAGCAGCAGCAGCAGCAGCTCTTCATCCCAGCTGTCAAAGCTCGAAGCAAGCCCCGCAGCCGCAGCTTCCAGCTTCTTCTTGTCTCGGAAGAAGTCCGACGCCCTTGAGGATTTAAGAAGCTACAGGGATATGAGAGAAACCCTCCTGCTTTCCAAGAGCAGCAGAAGCTCCCAAAATCCAGCATCAAAGTAGCTTATATTAAGTCCTTTCTGAACAAAAAAAGCTAAGCTTTTAGTACACCCAATTGTAACTAATCATCATCATCAAGGATTCCAGGTAGTTCTAATTGCTCTTCTTCTTCTTCATCATCATCATTATTATTATTCATATTATTCAGAGCCCAGTGTACATATGAAATCTAACTCTTATTGTCATTTCTTTGTTTTAGCCTTTTAACTGCCGGCCGGCTTTCTTTTGGAAAAAACATCATTCATTCTTTTCTAGAATTTGAATGTGCGAATTATTGCCCCTTTACTGATCAGTGCCGCAGGCAGTGTTCAACGACAAGTTTTTGTTTCTATATTATAGATTAAATTCAGTATGCTATTGTTAACTAAGTGCGACTCTTTCTGAGCTTACAGTCGTCGTATTAAATGGTCAAGTTTTTTTTTTTCTCTTACTAGTTACTAGTTTCCTTATTTATTTCTGTTGTAGTAGTTCAGTGGTTAAGCTCATAATTTATTATTTCATTTATTGATTATATATTTAAAGTTCA

Network for GWHGAAEX018953

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10033.8	ATG13	85	205	2.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08331	ATG13	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Longevity regulating pathway	map04211

Gene Ontology

GO term	Ontology	Name
GO:0006914	Biological Process	autophagy
GO:1990316	Cellular Component	ATG1/ULK1 kinase complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.800
SRP064423	SRR2545915	Juvenile tuber	10.710
SRP108465	SRR5643513	five period of Gastrodia elata	16.980
	SRR5643514	five period of Gastrodia elata	15.980
	SRR5643515	five period of Gastrodia elata	20.650
	SRR5643524	five period of Gastrodia elata	17.870
	SRR5643525	five period of Gastrodia elata	25.330
	SRR5643528	five period of Gastrodia elata	25.890
	SRR5643658	five period of Gastrodia elata	27.210
	SRR5643659	five period of Gastrodia elata	19.290
	SRR5643660	five period of Gastrodia elata	18.030
	SRR5643661	five period of Gastrodia elata	20.160
	SRR5643662	five period of Gastrodia elata	22.270
	SRR5643663	five period of Gastrodia elata	18.540
	SRR5643664	five period of Gastrodia elata	20.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.330
SRP279888	Gastro	Gastrodia elata tuber	13.77
	Juven	Juvenile tuber	16.40
	Mother_Gastro	Mother tuber of Gastrodia elata	18.52
	Mother_Juven	Mother tuber of Juvenile	15.71