Detail information of GWHGAAEX018964/evm.TU.scaffold_99.185


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG35044.00E-2560S ribosomal protein L29
nrgi|672125638|ref|XP_008786240.1|1.18E-28PREDICTED: 60S ribosomal protein L29-1-like [Phoenix dactylifera]
Swissprottr|Q84WM0|RL292_ARATH1.00E-2560S ribosomal protein L29-2
trEMBLtr|M0TPA4|M0TPA4_MUSAM2.00E-28Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P10510_001}
TAIRAT3G066804.00E-25Ribosomal L29e protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009838056513813666+
Transcript Sequence

Network for GWHGAAEX018964

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01779.16Ribosomal_L29e3425.80E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02905RP-L29e, RPL29 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.240
SRR2545915Juvenile tuber30.270
SRP108465SRR5643513five period of Gastrodia elata27.630
SRR5643514five period of Gastrodia elata28.330
SRR5643515five period of Gastrodia elata27.650
SRR5643524five period of Gastrodia elata30.070
SRR5643525five period of Gastrodia elata13.110
SRR5643528five period of Gastrodia elata20.940
SRR5643658five period of Gastrodia elata13.990
SRR5643659five period of Gastrodia elata16.360
SRR5643660five period of Gastrodia elata20.600
SRR5643661five period of Gastrodia elata23.550
SRR5643662five period of Gastrodia elata18.180
SRR5643663five period of Gastrodia elata21.650
SRR5643664five period of Gastrodia elata12.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.810
SRR6049655Rhizomagastrodiae_C368-T10_good_18.350
SRR6049656Rhizomagastrodiae_C368-T07_good_117.140
SRR6049657Rhizomagastrodiae_C368-T07_good_113.400
SRR6049658Rhizomagastrodiae_C368-T04_good_114.530
SRR6049659Rhizomagastrodiae_C368-T04_good_16.400
SRR6049660Rhizomagastrodiae_C368-T01_good_115.630
SRR6049661Rhizomagastrodiae_C368-T04_good_116.710
SRR6049662Rhizomagastrodiae_C368-T01_good_121.840
SRR6049663Rhizomagastrodiae_C368-T01_good_119.640
SRR6049664Rhizomagastrodiae_C368-T10_good_136.400
SRR6049665Rhizomagastrodiae_C368-T10_good_136.400
SRP279888GastroGastrodia elata tuber 3.54
JuvenJuvenile tuber3.89
Mother_GastroMother tuber of Gastrodia elata 1.91
Mother_JuvenMother tuber of Juvenile 2.39