Gene detail

Detail information of GWHGAAEX018969/evm.TU.scaffold_99.192

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|257094183\|ref\|YP_003167824.1\|	3.00E-23	WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
KOG	KOG0283	1.00E-152	WD40 repeat-containing protein
nr	gi\|743777694\|ref\|XP_010919285.1\|	0	PREDICTED: uncharacterized protein LOC105043440 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6S7B0\|TAF5_ARATH	6.00E-11	Transcription initiation factor TFIID subunit 5
trEMBL	tr\|M0SYP3\|M0SYP3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P15140_001}
TAIR	AT5G24320	1.00E-152	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000098	3937256	3941718	+

Transcript Sequence
>GWHTAAEX018969 ATGATGGCTTGCGATTGTGTGTTCAGAGGGGAGGAGGTGGATGATCAGTTTTTTGATTCTCGTGAAGACTTGTCGTCGGTATTCGATTCTTGCTCTAATAGCCCGGGCACGCATCATGTCTCGTACATAGAAGACAGGTCTGCAAATTTAATTATCAGTGATCCTTTATACCAAGTTTGGATCAAAAGTCCGGGTAGCGTACAAGAAAGGCGAGCCAGGTTCATGAAGCACATGTGCTTGGATTCGTTTGTTTCTCATGGAGAGCTAACCGCAGATGACGAATATGACAGTTCCGTCAGTAAGATTTCCTCGAATTATGACTCTGTTTTTAGGGAACCTTCATCCGTTAAGTTTGATGAAGCTCCTAGCACGTCACTGCGAAGATCCAATGCCGAGCAATTTGATCGAAGAATCGAGAGCTTAGATTGCGGCAGAGCTTTCGTTGCCCATGAATCGAATCACGATGTCTCCTTGTTAGAGAGCAACTCAGTGAAAGCATCAAAGCGGAAGAAATTTCGGTGGCTAAGGCGGTTGGGTTCCTTGACATGTATTGTTTATAGGAAAGATTATAGAATTGATTCAGAGTTGATTAATCCTGATGAGAGTGCGCATTCTGGGTTTCAGAGAGTTCATGTGCATTTGAATAATAAACAACTGAAGGAATTCTCTGCAGTTTATTTGAGGCAAAATTTCAAGGCTCACATTGGGGCCATACTTGCTATGAAGTTTAGCCCTGATGGCCAGTATTTAGCTAGCGGCGGCGAAGATGGAGTCGTGCGCGTATGGCGGGTGATGGAATCTGCGAGGAATGATGAAGATTGTGCTCTAGACAATGATCCTTCATGTATATACTTCAGTGTGAGCAACCAATCCAAAGTTTCACCACTAATTGCTGATAAATTGAAAAGAATCAAACCCAGAATTATGAGTAGAAGCTCAAATTCAGCTTGTATTGTTGTCCCTTCCAACGTTTTTGAGATATCCAAGATACCATTGTACGAGTTTCATGGCCATGAAGGCGATGTGTTGGATCTTGCATGGTCAAAAGATAAGTGCTTGCTATCATCTTCTATTGATAAAACTGTACGACTGTGGCAATTGGGACGTGTTGATTGCCTCAAAGTTTTTGCTCATAACAACTATGTGACTTGTGTTCAGTTTAATCCGATTGACGGTAAATATTTTGTTAGCGGCTCTATAGATGGTAAAGTTCGCATCTGGAAAACCCTAACTTGTCGTGTTGTGAATTGGATTGATGCAAAGCAAATTGTCACGGCAATTTGTTATCGCCCCGATGGGAAGGGATTGGTGGTTGGCTCCATGTTGGGTGATTGCCATTTTTATGATGCATCATCAGATGATGATCTGCAACTGTACTCAAAGATTTCATTTGAGGGAAAAAAGAAGTCATTAGATAAGAGGATAACTGGGATTCAGTTTTGCCCCGGCAGCTGCAGTCTGCTAATGGTCACGTCTGCAGACCGTGCAATACGAATTCTTGAAGGGACCATTGTTGTATCTAAATACAAAGGCCTTCGAAATTCGGGAAGTCAGATATCTGCAACATTCATGCCGGACGGGCGGCACATAGTTTCCGCTAGCACAGACTCAAATGTCTACATCTGGAACACGTCCAACTCGAAGAGCATCTGGTCGTCAGAGCGCTTCACCTCTAGCCACGTGTCCGTCGCAGTGCCATGGCCAGGTTTCTTGAAAAAATCTAGCATTGAGGGATCGGAAAATGACTCCCTTTGCGGAATGGACTATATGGGGATTAAGATTATGTGCCTCTTGTTCTCCAGCAATTTTACTTTAACCCGCGAGCTCTTCGCCGATTTCATTCTTCAGGGATCAGCGACGTGGCCTGAGGAGAAGCTGGCATCTTGCATTATGGCAAAAGCTAGAACACTGAGCACTGGTAGATCACATCCCAAATTTCTAAAGACCTCCTTTCAGAAGAATTGCTCCCATTTCTGGGGTCAGGTTATAGTAACTGCTGGCTGTGATGGGAGGATAAGGTCTTTCCAGAACTACGGCTTGCCAGTCCGACTGTGA

Network for GWHGAAEX018969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	229	262	7.40E-08
PF00400.31	WD40	331	365	5.30E-06
PF00400.31	WD40	371	408	1.10E-05
PF00400.31	WD40	520	543	0.11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.470
SRP064423	SRR2545915	Juvenile tuber	5.480
SRP108465	SRR5643513	five period of Gastrodia elata	5.540
	SRR5643514	five period of Gastrodia elata	10.520
	SRR5643515	five period of Gastrodia elata	5.660
	SRR5643524	five period of Gastrodia elata	9.300
	SRR5643525	five period of Gastrodia elata	9.630
	SRR5643528	five period of Gastrodia elata	10.710
	SRR5643658	five period of Gastrodia elata	8.870
	SRR5643659	five period of Gastrodia elata	3.500
	SRR5643660	five period of Gastrodia elata	3.270
	SRR5643661	five period of Gastrodia elata	3.050
	SRR5643662	five period of Gastrodia elata	2.750
	SRR5643663	five period of Gastrodia elata	2.450
	SRR5643664	five period of Gastrodia elata	3.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.920
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.770
SRP279888	Gastro	Gastrodia elata tuber	5.22
	Juven	Juvenile tuber	8.06
	Mother_Gastro	Mother tuber of Gastrodia elata	14.28
	Mother_Juven	Mother tuber of Juvenile	16.37