Gene detail

Detail information of GWHGAAZE000002

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011027164.1	1.721E-122	PREDICTED: dephospho-CoA kinase [Populus euphratica]
COG	NP_470934.1	5E-50	dephospho-CoA kinase
Swissprot	tr\|Q9ZQH0\|COAE_ARATH	2E-108	Dephospho-CoA kinase
trEMBL	tr\|A0A059A867\|A0A059A867_EUCGR	2E-122	Uncharacterized protein {ECO:0000313\|EMBL:KCW50008.1}
TAIR10	AT2G27490.2	4E-81	dephospho-CoA kinase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	2811	9834	+
GWHAAZE00000001	mRNA	2811	9834	+
GWHAAZE00000001	exon	2811	2918	+
GWHAAZE00000001	exon	3180	3325	+
GWHAAZE00000001	exon	4122	4527	+
GWHAAZE00000001	exon	7728	7803	+
GWHAAZE00000001	exon	8370	8691	+
GWHAAZE00000001	exon	8790	8963	+
GWHAAZE00000001	exon	9795	9834	+
GWHAAZE00000001	CDS	2811	2918	+
GWHAAZE00000001	CDS	3180	3325	+
GWHAAZE00000001	CDS	4122	4527	+
GWHAAZE00000001	CDS	7728	7803	+
GWHAAZE00000001	CDS	8370	8691	+
GWHAAZE00000001	CDS	8790	8963	+
GWHAAZE00000001	CDS	9795	9834	+

Transcript Sequence
>GWHTAAZE000002 ATGAGATTAGTGGGACTGACCGGAGGGATCGGAACTGGAAAGAGTACGGTCTCCAATCTCTTCAAGGCTCACGGAATACCCGTCGTCGATGCCGATCTCGTCGCTCGTGATGTATTGAAGAAAGGGACTGGTGGATGGAAAAAAGTTGTAGCAGCATTTGGGGATGACATATTACAGGCAAACGGAGAAGTTGATCGGCCGAAGCTCGGTCAAATTGTATTTTCTGATCCTGCAAAGCGGCAGCTTCTCAATAGGCTGCTGGCACCTTATATATCATCAGGTATTTTCTGGGAAGTTTTGAAGCTATGGATCAAGGGTTGTAAGGTTATCGTTCTTGATGTCCCTTTGCTGTTTGAGGCCAAGATAGACAAGTGGACAAAGCCCATTATTGTGGTGTGGGTTGACCTTGCAACGCAGCTTCAGAGACTCATGGCTAGAGACAGAATATCAATCGAAGATGCCAAAAACAGGATCAATGCTCAGATGCCTCTCAATTTGAAGAAGAACAAGGCCGACATAGTGATTGATAACACCGGATCACTCGAAGATTTAAACGAACATTTCAGCAAGGCTTTAGCCCAGGTCTTGAAGCCCTTGACGTGGACTGAATTTTGGCTTTCTAGGCAGGAGTTGTTGTGGCTCTTGTATCTATTATTTCAGACTCATGCCTTGAAAGTTTATATCCATTGTGAGGGCTGCAAGAAGAAAGTCAAGAAAGTTCTTCACAGCATCGATGGTGTTTATAAGACTAATATAGATTCTCAGCAGCAGAAAGTTACAGTTACCGGAAACGTGGACGCCAACACATTGATCAAGAAGCTGCTGAGATCAGGTAAATGCGTTGAGCTCTGGCCCGAAAGCACAGGTGGAAATGACAAAAATCCCGGGAAATCAAAGAACAAGAAAAAACAAAAAAAACCCAACGATGGTGGAAATAATGAAGAACAGATCAAGAGTGAGGCAGAAACAAATGAAAATCTGCCCAAGATTCTGGCAATGCAAAACAGAGCCAAATTGGGATGCCGGAGAAATCTGATCTGGACGGCAATCAGACGCCATGGTACAATGTCAAATGGTGAAAGTGGAAACAGTGCCAACGCACCTGCGGGTACTGGAACTCCACCCACTGGAGCCGTGGATCCGCAGGTGTGGCCGATTAATCTCGGCCCTCCACCTCAGCAAGTGTATCAGTATCCAGTACTCCCCGCATATGGGTTGAGTTACAATACGGTGTGGCCGGGTGTGGGGACCCCAAATATTGGTGATGTGTAA

Network for GWHGAAZE000002

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0002

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01121.21	CoaE	3	182	1.60E-58
PF00403.27	HMA	228	275	5.10E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00859	coaE	Metabolic pathways	map01100
K00859	coaE	Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0015937	biological_process	coenzyme A biosynthetic process
GO:0030001	biological_process	metal ion transport
GO:0004140	molecular_function	dephospho-CoA kinase activity
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.605
	SRR3591706	second leaf	6.750
	SRR3591707	mature leaf	4.604
	SRR3591708	Shoot apex	17.003
	SRR3591709	Stem	27.019
	SRR3591710	White floral bud	9.096
	SRR3591711	White flower	7.910
	SRR3591712	Green floral bud	10.536
	SRR3591713	Yellow flower	5.769
SRP173429	SRR8316895	Juvenile bud stage	7.746
	SRR8316896	Juvenile bud stage	9.274
	SRR8316897	Juvenile bud stage	4.174
	SRR8316894	Third green stage	3.685
	SRR8316900	Third green stage	13.428
	SRR8316901	Third green stage	12.370
	SRR8316898	Complete white stage	2.921
	SRR8316899	Complete white stage	17.888
	SRR8316903	Complete white stage	5.669
	SRR8316902	Silver flowering stage	2.243
	SRR8316904	Silver flowering stage	3.647
	SRR8316905	Silver flowering stage	1.580
	SRR8316906	Gold flowering stage	5.283
	SRR8316907	Gold flowering stage	7.009
	SRR8316908	Gold flowering stage	4.858
SRP132670	SRR6706286	Control	15.807
	SRR6706287	Light intensity 50%	14.371
	SRR6706288	Light intensity 20%	11.947
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.843
	CNS0095593	Slightly white alabastrum(diploid) 2	12.039
	CNS0095594	Slightly white alabastrum(diploid) 3	10.334
	CNS0095595	Whole white alabastrum(diploid) 2	7.808
	CNS0095596	Whole white alabastrum(diploid) 3	7.020
	CNS0095597	Whole white alabastrum(diploid) 4	5.837
	CNS0095598	Silvery flower (diploied) 1	11.900
	CNS0095599	Silvery flower (diploied) 2	8.656
	CNS0095600	Silvery flower (diploied) 3	6.070
	CNS0095601	Golden flower (diploid) 1	13.620
	CNS0095602	Golden flower (diploid) 2	9.417
	CNS0095603	Golden flower (diploid) 3	9.755
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.642
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.185
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.709
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.452
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.036
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.709
	CNS0095610	Silvery flower (tetraploid) 1	7.943
	CNS0095611	Silvery flower (tetraploid) 2	6.730
	CNS0095612	Silvery flower (tetraploid) 3	4.066
	CNS0095613	Golden flower (tetraploid) 1	4.994
	CNS0095614	Golden flower (tetraploid) 2	8.332
	CNS0095615	Golden flower (tetraploid) 3	4.609
CRA001975	CRR073297	Stem 1	11.658
	CRR073298	Stem 2	8.983
	CRR073299	Stem 3	11.608
	CRR073300	Leaf 1	10.152
	CRR073301	Leaf 2	12.399
	CRR073302	Leaf 3	9.112
	CRR073303	Juvenile bud 1	10.116
	CRR073304	Juvenile bud 2	6.249
	CRR073305	Juvenile bud 3	11.723
	CRR073306	Third green 1	1.664
	CRR073307	Third green 2	2.046
	CRR073308	Third green 3	2.526
	CRR073309	Second white 1	3.456
	CRR073310	Second white 2	2.171
	CRR073311	Second white 3	1.743
	CRR073312	Silver flowering 1	1.531
	CRR073313	Silver flowering 2	0.677
	CRR073314	Silver flowering 3	0.747
	CRR073315	Gold flowering 1	4.774
	CRR073316	Gold flowering 2	5.843
	CRR073317	Gold flowering 3	3.420
	CRR073318	Tawny withering 1	19.258
	CRR073319	Tawny withering 2	8.046
	CRR073320	Tawny withering 3	27.033