Gene detail

Detail information of GWHGAAZE000020

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273793.1	0	PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Vitis vinifera]
COG	YP_007116263.1	2E-115	protoporphyrinogen oxidase
Swissprot	tr\|P55826\|PPOC_ARATH	0	Protoporphyrinogen oxidase 1, chloroplastic (Precursor)
trEMBL	tr\|D7U2T4\|D7U2T4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37050.3}
TAIR10	AT4G01690.1	0	Flavin containing amine oxidoreductase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	742904	748909	+
GWHAAZE00000001	mRNA	742904	748909	+
GWHAAZE00000001	exon	742904	743374	+
GWHAAZE00000001	exon	743534	743701	+
GWHAAZE00000001	exon	743872	743956	+
GWHAAZE00000001	exon	744575	744722	+
GWHAAZE00000001	exon	744814	744894	+
GWHAAZE00000001	exon	745118	745229	+
GWHAAZE00000001	exon	745642	745801	+
GWHAAZE00000001	exon	745909	746034	+
GWHAAZE00000001	exon	747240	747343	+
GWHAAZE00000001	exon	748610	748909	+
GWHAAZE00000001	CDS	742904	743374	+
GWHAAZE00000001	CDS	743534	743701	+
GWHAAZE00000001	CDS	743872	743956	+
GWHAAZE00000001	CDS	744575	744722	+
GWHAAZE00000001	CDS	744814	744894	+
GWHAAZE00000001	CDS	745118	745229	+
GWHAAZE00000001	CDS	745642	745801	+
GWHAAZE00000001	CDS	745909	746034	+
GWHAAZE00000001	CDS	747240	747343	+
GWHAAZE00000001	CDS	748610	748909	+

Transcript Sequence
>GWHTAAZE000020 ATGACAACCCTGACGGAGCTTGCTCATTTTACCCCCTATCTATTTCCCACATCCAAATCCCACCGAGTAGTTTTACCTTCAACCTCGTCATCATCCACATTTGTGAACCCTCGATATTTGTCCACCACACGTACACATACACATACACCACGACCCTTGTCTAAAAAACGTCACAATCGCAACAGCAGCAGATTCCGATGCTCGGTGTCAACAATTACTCCCCCGAGCAAGGATGTGGCTTCAGACGACGGCCAATCCGTGTTGGACTGCGTCATTGTTGGAGCCGGTATCAGCGGTCTCTGCATCGCCCAGGCTCTATCCACTAAGTACCCCGACCTTTCCCCCAATTTCATTGTCACCGAGGCTCAAGGTAGAGTCGGAGGCAATATTACCACCCTCCACAAGGATGGCTTTCTCTGGGAAGAAGGCCCCAACAGTTTTCAGCCCTCCGATCCCATGCTCACCACTGTCGATGACTTGGTGTTTGGTGACCCTACCGCACCTCGTTTTGTGTTATGGGGTGGTAAATTGAGGCCAGTACCTTCCAAGCCAACCGATTTGCCCTTCTTTGACTTGATGAGTTTTGGTGGGAAGCTCAGAGCTGGCTTTGGTGCCCTTGGATTCCGCCCTGCTCCACCGGCTCGTGAGGAATCAGTTGAGGAGTTTGTGCGTCGTAATCTGGGTGATGAAGTTTTTGAACGATTGATAGAGCCATTTTGCTCAGGTGTTTATGCCGGTGATCCATCAACACTGAGTATGAAAGCAGCATTTGGAAAAGTTTGGAAGCTAGAGCAGAATGGTGGTAGTATTGTTGCTGGAGCATTCAAAGCTATCCAGGAGAGAAAGAATAGTCCGAAACCACCTCGAGATCCGCGTTTACCAACACCAAAGGGCCAGACAGTTGTATCATTTAGGAAGGGATTGGCAATGTTGCCTGATGCAATTTCTAATAGGAGGTATAGTTTGACTTATGAAACACCAGAAGGATTGATTTCTCTGCAGAGTAAAACTGTTGTCATGACTGTTCCATCCCATGTGGCTAGCAGTTTATTACGTCCCATTTCGGTTCCTGCAGCAGATGCACTATCAAAATTATATTACCCCCCTGTTGCGGCGGTATCCATTTCATATCCAAAAGAAGCAATTCGTGGTGAATGTTTGATTGATGGGGAACTAAAGGGATTTGGGCAATTACATCCACGCAGCCAAGGGGTGGAAACATTAGTGTCTACTAACGCTCCCAGTTGCCTGAGGACTTTAGCAACCATTCAAACCTCTAGGCTAAGCAGATCTGCTAATCTGTCCACCGTCATTGGTAAGGTGCTAATCTGTTATCTGTCCACTGTCATTGGAACTATATATAGCTCATCACTTTTTCCTAACAGAGCACCACCTGGAAGAATTCTGCTGTTGAACTACATTGGAGGGGCCACCAATCCTGGTATTTTGTCGAGGCCGGAGAGTCAACTCGTGGAAGCAGTTGACCGTGACCTGCGAAAGATGCTCATAAAGTCAAATGCAAAAGATCCGCTGGTCTTGGGAGTGCGAGTGTGGCCACAAGCCATACCACAGTTCTTGATTGGTCATTTTGATATCCTTGATTCGGCAAAATCTGCTCTCAGAGATGCTGGGTTCCAAGGGATGTTTCTTGGGGGCAACTTTGTCTCTGGTGTGGCCTTGGGCCGTTGTGTGGAGGGTGCTTATGAAATTGCAGCCGAGGTAACTGATTTTTTGTCGCGCTCTCTCTACAAGTGA

Network for GWHGAAZE000020

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01593.25	Amino_oxidase	97	386	1.80E-43
PF01593.25	Amino_oxidase	441	569	6.20E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00231	PPOX, hemY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006779	biological_process	porphyrin-containing compound biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0004729	molecular_function	oxygen-dependent protoporphyrinogen oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.132
	SRR3591706	second leaf	80.332
	SRR3591707	mature leaf	45.905
	SRR3591708	Shoot apex	86.508
	SRR3591709	Stem	25.950
	SRR3591710	White floral bud	32.953
	SRR3591711	White flower	31.554
	SRR3591712	Green floral bud	49.189
	SRR3591713	Yellow flower	26.461
SRP173429	SRR8316895	Juvenile bud stage	56.551
	SRR8316896	Juvenile bud stage	64.398
	SRR8316897	Juvenile bud stage	35.746
	SRR8316894	Third green stage	25.014
	SRR8316900	Third green stage	77.240
	SRR8316901	Third green stage	67.815
	SRR8316898	Complete white stage	21.602
	SRR8316899	Complete white stage	53.931
	SRR8316903	Complete white stage	33.672
	SRR8316902	Silver flowering stage	16.333
	SRR8316904	Silver flowering stage	23.492
	SRR8316905	Silver flowering stage	12.835
	SRR8316906	Gold flowering stage	33.512
	SRR8316907	Gold flowering stage	37.664
	SRR8316908	Gold flowering stage	37.530
SRP132670	SRR6706286	Control	77.705
	SRR6706287	Light intensity 50%	79.797
	SRR6706288	Light intensity 20%	85.852
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.329
	CNS0095593	Slightly white alabastrum(diploid) 2	43.467
	CNS0095594	Slightly white alabastrum(diploid) 3	40.500
	CNS0095595	Whole white alabastrum(diploid) 2	39.675
	CNS0095596	Whole white alabastrum(diploid) 3	41.199
	CNS0095597	Whole white alabastrum(diploid) 4	29.335
	CNS0095598	Silvery flower (diploied) 1	56.374
	CNS0095599	Silvery flower (diploied) 2	53.707
	CNS0095600	Silvery flower (diploied) 3	51.529
	CNS0095601	Golden flower (diploid) 1	44.974
	CNS0095602	Golden flower (diploid) 2	43.766
	CNS0095603	Golden flower (diploid) 3	42.575
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.952
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.419
	CNS0095606	Slightly white alabastrum(tetraploid) 3	79.928
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.194
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.195
	CNS0095609	Whole white alabastrum(tetraploid) 3	73.238
	CNS0095610	Silvery flower (tetraploid) 1	43.221
	CNS0095611	Silvery flower (tetraploid) 2	53.872
	CNS0095612	Silvery flower (tetraploid) 3	57.745
	CNS0095613	Golden flower (tetraploid) 1	29.807
	CNS0095614	Golden flower (tetraploid) 2	43.841
	CNS0095615	Golden flower (tetraploid) 3	31.450
CRA001975	CRR073297	Stem 1	103.759
	CRR073298	Stem 2	95.026
	CRR073299	Stem 3	110.890
	CRR073300	Leaf 1	74.141
	CRR073301	Leaf 2	74.477
	CRR073302	Leaf 3	82.417
	CRR073303	Juvenile bud 1	71.861
	CRR073304	Juvenile bud 2	62.554
	CRR073305	Juvenile bud 3	64.677
	CRR073306	Third green 1	42.407
	CRR073307	Third green 2	21.411
	CRR073308	Third green 3	29.669
	CRR073309	Second white 1	39.027
	CRR073310	Second white 2	34.197
	CRR073311	Second white 3	34.232
	CRR073312	Silver flowering 1	35.616
	CRR073313	Silver flowering 2	40.672
	CRR073314	Silver flowering 3	34.018
	CRR073315	Gold flowering 1	111.608
	CRR073316	Gold flowering 2	153.895
	CRR073317	Gold flowering 3	110.519
	CRR073318	Tawny withering 1	42.419
	CRR073319	Tawny withering 2	35.182
	CRR073320	Tawny withering 3	41.634