Gene detail

Detail information of GWHGAAZE000054

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011040796.1	1.517E-176	PREDICTED: probable pectinesterase 53 [Populus euphratica]
COG	YP_006407803.1	2E-50	pectin methylesterase
Swissprot	tr\|Q8VYZ3\|PME53_ARATH	4E-88	Probable pectinesterase 53 (Precursor)
trEMBL	tr\|B9I9F4\|B9I9F4_POPTR	2E-176	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G19730.1	1E-73	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	1359526	1361541	+
GWHAAZE00000001	mRNA	1359526	1361541	+
GWHAAZE00000001	exon	1359526	1359893	+
GWHAAZE00000001	exon	1360010	1360124	+
GWHAAZE00000001	exon	1360715	1360918	+
GWHAAZE00000001	exon	1361048	1361283	+
GWHAAZE00000001	exon	1361391	1361541	+
GWHAAZE00000001	CDS	1359526	1359893	+
GWHAAZE00000001	CDS	1360010	1360124	+
GWHAAZE00000001	CDS	1360715	1360918	+
GWHAAZE00000001	CDS	1361048	1361283	+
GWHAAZE00000001	CDS	1361391	1361541	+

Transcript Sequence
>GWHTAAZE000054 ATGGCTTCAAAAACTTATTTCCACCTTGTTATTTTCTTCCTATCTCTTCAGTGTTTGAACTCATGCTCATCGTCAAGTCTAGATAGACAAATAGGCTACAAAAAATGGGTATCATGGAACCTACGAAATTACCGCGAGAAGACCGATATCCTCTCTACTACTTTGAAATCAAAACCAATCAGTCCATCACCATTCACTGGATCCCAAATCCTTGATTCAGCTCTGAGGAAAGCAGAGCTGAAAAAACTCAGAATAAGCGTTAGCCAAGATGGAACCAGTAATTTCAAGACCATCACTGAAGCAATCAATAGCATTCCTTTATACAACAATCGCAGAGTTATTTTGGAAATAAAACCAGGTGTTTATAGGGAAAAAATTGTTATCCCCAGAACTTTGCCGTTTGTGACGTTATTAGGAGACTCGAGTGATCCGCCAACTATCACAGGGAATGACACTGCTTCCTTTCAGAGTGGAAGAGATGGGAACACGGCTCCACATGAAATTGGGTCGATTGGAGAACAGGCAGTGGCACTACGCATTTCGGGGAGTAAGGCTGCATTTTACAACTGCAGTTTCTATGGGGCTCAAGACACCCTTTATGATCACAAAGGCCTCCACTATTTCAACAATTGCTTCATCCAAGGCTCTGTCGATTTTATCTTCGGCTATGGCAGATCCCTTTATGAGAATTGTTGGTTGAACTCCATATCCAAGAAGGTTGCATCTGTAACTGCTCAAAAACGGAGTATTTCATCAATGTGGAGCGGATTTTCGTTCAAGGACAGTAAGGTAACAGGGAGCGGAAAGGTGTACCTAGGAAGAGCATGGGGTGACTATTCCCGGGTTGTCTTCTCATATACATATATGGACCAGATTGTCCTTCCCCAGGGCTGGAGCGACTGGGGCAATCAAAGCCGTGACTCGAGGGTGTATTATGGAGAATACAAGTGTAGTGGACCAGGAGGCAACTCTAGTGGAAGAGTGCCATGGGCACTAGCACTTACCGACAAAGAAGCTCACCCATTTATTGGGACATACTATGTCTATGGAGACACCTGGCTCTTAAAACCTTAA

Network for GWHGAAZE000054

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	85	350	1.20E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.811
	SRR3591706	second leaf	1.804
	SRR3591707	mature leaf	0.073
	SRR3591708	Shoot apex	4.985
	SRR3591709	Stem	47.105
	SRR3591710	White floral bud	0.185
	SRR3591711	White flower	0.135
	SRR3591712	Green floral bud	0.234
	SRR3591713	Yellow flower	0.074
SRP173429	SRR8316895	Juvenile bud stage	4.580
	SRR8316896	Juvenile bud stage	4.546
	SRR8316897	Juvenile bud stage	3.182
	SRR8316894	Third green stage	3.072
	SRR8316900	Third green stage	5.717
	SRR8316901	Third green stage	4.712
	SRR8316898	Complete white stage	0.558
	SRR8316899	Complete white stage	7.528
	SRR8316903	Complete white stage	1.467
	SRR8316902	Silver flowering stage	0.332
	SRR8316904	Silver flowering stage	0.250
	SRR8316905	Silver flowering stage	0.142
	SRR8316906	Gold flowering stage	0.217
	SRR8316907	Gold flowering stage	1.166
	SRR8316908	Gold flowering stage	0.563
SRP132670	SRR6706286	Control	3.799
	SRR6706287	Light intensity 50%	3.875
	SRR6706288	Light intensity 20%	3.054
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.030
	CNS0095593	Slightly white alabastrum(diploid) 2	2.687
	CNS0095594	Slightly white alabastrum(diploid) 3	1.364
	CNS0095595	Whole white alabastrum(diploid) 2	0.869
	CNS0095596	Whole white alabastrum(diploid) 3	1.045
	CNS0095597	Whole white alabastrum(diploid) 4	1.070
	CNS0095598	Silvery flower (diploied) 1	1.723
	CNS0095599	Silvery flower (diploied) 2	2.021
	CNS0095600	Silvery flower (diploied) 3	0.486
	CNS0095601	Golden flower (diploid) 1	0.683
	CNS0095602	Golden flower (diploid) 2	0.874
	CNS0095603	Golden flower (diploid) 3	0.422
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.140
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.574
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.164
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.296
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.208
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.797
	CNS0095610	Silvery flower (tetraploid) 1	0.103
	CNS0095611	Silvery flower (tetraploid) 2	0.231
	CNS0095612	Silvery flower (tetraploid) 3	0.231
	CNS0095613	Golden flower (tetraploid) 1	0.151
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.654
	CRR073298	Stem 2	1.934
	CRR073299	Stem 3	3.948
	CRR073300	Leaf 1	1.108
	CRR073301	Leaf 2	1.306
	CRR073302	Leaf 3	2.703
	CRR073303	Juvenile bud 1	0.590
	CRR073304	Juvenile bud 2	0.281
	CRR073305	Juvenile bud 3	0.458
	CRR073306	Third green 1	0.252
	CRR073307	Third green 2	0.071
	CRR073308	Third green 3	0.324
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.034
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.386
	CRR073316	Gold flowering 2	0.728
	CRR073317	Gold flowering 3	1.788
	CRR073318	Tawny withering 1	4.778
	CRR073319	Tawny withering 2	4.138
	CRR073320	Tawny withering 3	7.268