Detail information of GWHGAAZE000062


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010267918.10PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Nelumbo nucifera]
Swissprottr|Q9SYJ2|GPAT3_ARATH0Probable glycerol-3-phosphate acyltransferase 3
trEMBLtr|A0A061DTB1|A0A061DTB1_THECC0Glycerol-3-phosphate acyltransferase 3, putative {ECO:0000313|EMBL:EOX95331.1}
TAIR10AT4G01950.11E-158glycerol-3-phosphate acyltransferase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene14612801463371-
GWHAAZE00000001mRNA14612801463371-
GWHAAZE00000001exon14612801462155-
GWHAAZE00000001exon14626641463371-
GWHAAZE00000001CDS14626641463371-
GWHAAZE00000001CDS14612801462155-
Transcript Sequence

Network for GWHGAAZE000062

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01553.22Acyltransferase3314204.50E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13508GPAT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerolipid metabolismmap00561
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName
GO:0016746molecular_functiontransferase activity, transferring acyl groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.886
SRR3591706second leaf0.117
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.195
SRR3591709Stem0.329
SRR3591710White floral bud2.748
SRR3591711White flower1.299
SRR3591712Green floral bud3.488
SRR3591713Yellow flower0.454
SRP173429 SRR8316895Juvenile bud stage 4.412
SRR8316896Juvenile bud stage 1.026
SRR8316897Juvenile bud stage 1.907
SRR8316894Third green stage 1.088
SRR8316900Third green stage 0.969
SRR8316901Third green stage 1.387
SRR8316898Complete white stage 0.081
SRR8316899Complete white stage 3.673
SRR8316903Complete white stage 0.155
SRR8316902Silver flowering stage0.303
SRR8316904Silver flowering stage0.348
SRR8316905Silver flowering stage0.158
SRR8316906Gold flowering stage 0.153
SRR8316907Gold flowering stage 0.153
SRR8316908Gold flowering stage 0.144
SRP132670SRR6706286Control0.407
SRR6706287Light intensity 50%2.126
SRR6706288Light intensity 20%1.214
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.968
CNS0095593Slightly white alabastrum(diploid) 21.869
CNS0095594Slightly white alabastrum(diploid) 32.083
CNS0095595Whole white alabastrum(diploid) 20.645
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.301
CNS0095598Silvery flower (diploied) 12.793
CNS0095599Silvery flower (diploied) 21.543
CNS0095600Silvery flower (diploied) 30.767
CNS0095601Golden flower (diploid) 12.816
CNS0095602Golden flower (diploid) 20.436
CNS0095603Golden flower (diploid) 31.144
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.043
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.033
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.147
CNS0095612Silvery flower (tetraploid) 30.043
CNS0095613Golden flower (tetraploid) 10.067
CNS0095614Golden flower (tetraploid) 20.077
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.285
CRR073298Stem 20.934
CRR073299Stem 30.584
CRR073300Leaf 11.871
CRR073301Leaf 23.763
CRR073302Leaf 30.628
CRR073303Juvenile bud 10.887
CRR073304Juvenile bud 23.336
CRR073305Juvenile bud 31.300
CRR073306Third green 10.377
CRR073307Third green 20.134
CRR073308Third green 30.282
CRR073309Second white 10.000
CRR073310Second white 20.029
CRR073311Second white 30.000
CRR073312Silver flowering 10.060
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.184
CRR073317Gold flowering 30.394
CRR073318Tawny withering 10.119
CRR073319Tawny withering 20.453
CRR073320Tawny withering 30.000