Detail information of GWHGAAZE000077


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011089105.10PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Sesamum indicum]
COGYP_004303443.13E-35DNA methylase
Swissprottr|Q9AXT8|CMT1_MAIZE0DNA (cytosine-5)-methyltransferase 1
trEMBLtr|A0A068UZW0|A0A068UZW0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_73 {ECO:0000313|EMBL:CDP13153.1}
TAIR10AT1G69770.10chromomethylase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene16758041685502-
GWHAAZE00000001mRNA16758041685502-
GWHAAZE00000001exon16853021685502-
GWHAAZE00000001exon16851691685206-
GWHAAZE00000001exon16849391685041-
GWHAAZE00000001exon16831441683251-
GWHAAZE00000001exon16829381683057-
GWHAAZE00000001exon16827501682849-
GWHAAZE00000001exon16824641682666-
GWHAAZE00000001exon16822531682318-
GWHAAZE00000001exon16819311682164-
GWHAAZE00000001exon16814641681522-
GWHAAZE00000001exon16813121681378-
GWHAAZE00000001exon16808911681220-
GWHAAZE00000001exon16807551680823-
GWHAAZE00000001exon16801781680264-
GWHAAZE00000001exon16799991680089-
GWHAAZE00000001exon16795361679654-
GWHAAZE00000001exon16793351679436-
GWHAAZE00000001exon16767761676819-
GWHAAZE00000001exon16766311676700-
GWHAAZE00000001exon16764101676513-
GWHAAZE00000001exon16758041676017-
GWHAAZE00000001CDS16853021685502-
GWHAAZE00000001CDS16851691685206-
GWHAAZE00000001CDS16849391685041-
GWHAAZE00000001CDS16831441683251-
GWHAAZE00000001CDS16829381683057-
GWHAAZE00000001CDS16827501682849-
GWHAAZE00000001CDS16824641682666-
GWHAAZE00000001CDS16822531682318-
GWHAAZE00000001CDS16819311682164-
GWHAAZE00000001CDS16814641681522-
GWHAAZE00000001CDS16813121681378-
GWHAAZE00000001CDS16808911681220-
GWHAAZE00000001CDS16807551680823-
GWHAAZE00000001CDS16801781680264-
GWHAAZE00000001CDS16799991680089-
GWHAAZE00000001CDS16795361679654-
GWHAAZE00000001CDS16793351679436-
GWHAAZE00000001CDS16767761676819-
GWHAAZE00000001CDS16766311676700-
GWHAAZE00000001CDS16764101676513-
GWHAAZE00000001CDS16758521676017-
GWHAAZE00000001three_prime_UTR16758041675851-
Transcript Sequence

Network for GWHGAAZE000077

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01426.19BAH1052181.10E-07
PF00385.25Chromo3674217.10E-12
PF00145.18DNA_methylase4317913.80E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00558DNMT1, dcm Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0008168molecular_functionmethyltransferase activity
GO:0003682molecular_functionchromatin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.626
SRR3591706second leaf1.462
SRR3591707mature leaf0.101
SRR3591708Shoot apex16.945
SRR3591709Stem2.606
SRR3591710White floral bud0.683
SRR3591711White flower0.313
SRR3591712Green floral bud0.806
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.395
SRR8316896Juvenile bud stage 2.623
SRR8316897Juvenile bud stage 1.196
SRR8316894Third green stage 0.694
SRR8316900Third green stage 0.669
SRR8316901Third green stage 0.581
SRR8316898Complete white stage 0.034
SRR8316899Complete white stage 0.398
SRR8316903Complete white stage 0.060
SRR8316902Silver flowering stage0.026
SRR8316904Silver flowering stage0.054
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.056
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.560
SRR6706287Light intensity 50%0.600
SRR6706288Light intensity 20%0.675
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.786
CNS0095593Slightly white alabastrum(diploid) 21.701
CNS0095594Slightly white alabastrum(diploid) 31.092
CNS0095595Whole white alabastrum(diploid) 20.824
CNS0095596Whole white alabastrum(diploid) 30.489
CNS0095597Whole white alabastrum(diploid) 40.427
CNS0095598Silvery flower (diploied) 10.529
CNS0095599Silvery flower (diploied) 20.965
CNS0095600Silvery flower (diploied) 30.332
CNS0095601Golden flower (diploid) 10.519
CNS0095602Golden flower (diploid) 20.324
CNS0095603Golden flower (diploid) 30.262
CNS0095604Slightly white alabastrum(tetraploid) 11.878
CNS0095605Slightly white alabastrum(tetraploid) 22.201
CNS0095606Slightly white alabastrum(tetraploid) 33.613
CNS0095607Whole white alabastrum(tetraploid) 11.167
CNS0095608Whole white alabastrum(tetraploid) 20.414
CNS0095609Whole white alabastrum(tetraploid) 30.964
CNS0095610Silvery flower (tetraploid) 10.068
CNS0095611Silvery flower (tetraploid) 20.061
CNS0095612Silvery flower (tetraploid) 30.183
CNS0095613Golden flower (tetraploid) 10.068
CNS0095614Golden flower (tetraploid) 20.086
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 12.043
CRR073298Stem 22.457
CRR073299Stem 33.522
CRR073300Leaf 10.901
CRR073301Leaf 20.285
CRR073302Leaf 30.440
CRR073303Juvenile bud 10.243
CRR073304Juvenile bud 20.116
CRR073305Juvenile bud 30.317
CRR073306Third green 10.033
CRR073307Third green 20.000
CRR073308Third green 30.062
CRR073309Second white 10.000
CRR073310Second white 20.043
CRR073311Second white 30.000
CRR073312Silver flowering 10.124
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.145
CRR073316Gold flowering 20.458
CRR073317Gold flowering 30.140
CRR073318Tawny withering 14.843
CRR073319Tawny withering 22.709
CRR073320Tawny withering 34.672