Gene detail

Detail information of GWHGAAZE000081

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010268003.1	0	PREDICTED: DNA replication licensing factor MCM7 [Nelumbo nucifera]
COG	YP_006362644.1	5E-117	MCM family protein
Swissprot	tr\|B8BMI1\|MCM7_ORYSI	0	DNA replication licensing factor MCM7
trEMBL	tr\|A0A067H4R2\|A0A067H4R2_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO87003.1}
TAIR10	AT4G02060.2	0	Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	1712966	1719158	+
GWHAAZE00000001	mRNA	1712966	1719158	+
GWHAAZE00000001	exon	1712966	1713070	+
GWHAAZE00000001	exon	1713303	1713362	+
GWHAAZE00000001	exon	1713485	1713708	+
GWHAAZE00000001	exon	1714053	1714230	+
GWHAAZE00000001	exon	1714559	1714681	+
GWHAAZE00000001	exon	1714839	1714928	+
GWHAAZE00000001	exon	1715606	1715748	+
GWHAAZE00000001	exon	1716020	1716197	+
GWHAAZE00000001	exon	1716555	1716746	+
GWHAAZE00000001	exon	1716960	1717132	+
GWHAAZE00000001	exon	1717258	1717461	+
GWHAAZE00000001	exon	1717624	1717789	+
GWHAAZE00000001	exon	1717935	1718156	+
GWHAAZE00000001	exon	1719054	1719158	+
GWHAAZE00000001	CDS	1712966	1713070	+
GWHAAZE00000001	CDS	1713303	1713362	+
GWHAAZE00000001	CDS	1713485	1713708	+
GWHAAZE00000001	CDS	1714053	1714230	+
GWHAAZE00000001	CDS	1714559	1714681	+
GWHAAZE00000001	CDS	1714839	1714928	+
GWHAAZE00000001	CDS	1715606	1715748	+
GWHAAZE00000001	CDS	1716020	1716197	+
GWHAAZE00000001	CDS	1716555	1716746	+
GWHAAZE00000001	CDS	1716960	1717132	+
GWHAAZE00000001	CDS	1717258	1717461	+
GWHAAZE00000001	CDS	1717624	1717789	+
GWHAAZE00000001	CDS	1717935	1718156	+
GWHAAZE00000001	CDS	1719054	1719158	+

Transcript Sequence
>GWHTAAZE000081 ATGTATTTCAGATTAATCACTTTTTTTTTTGCTGTAGATCTAGCGAAAGAATTTCTTTCGCAGTTTGCCGACGCAAATGGCGAAGCCAAATACATCAACATCCTTCAAGATGTTGCAAATCGTAAAATCAAGGCAATCCAGATTGACCTCGAAGACTTATTCAATTATAAGGATTTGGATGAAGATTTTCTCAGACGAATTACTGAAAATACCCGGCGGTACATCGGAATCTTTGCGGATGCGATTGATGTGCTATTGCCAGAGCCAACAGAGGCCTTTCCGGATGATGATCATGATATTTTGATGACACAAAGGTCTGAAGAAGGGACTGATAATACGGATGGTTCTGATCCACGGCAGAGGATGCCTCCAGAAATCAAACGCTTCTATGAAGTTTATATTAGAGCTTCTTCAAAGGGTCCGCCATTCACTATCAGGGAGGTTAAGGCTTCATATATTGGTCAGCTTGTCAGGATATCAGGCATTGTGACTCGCTGTTCCGATGTCAAGCCTCTGATGCAGGTAGCTGTTTACACGTGTGAAGAATGTGGCTTCGAAATTTACCAGGAGGTAACTGGTCGAGTCTTCATGCCTCTGTTTGAGTGCCCATCCAATCGTTGTAAAACAAACCAGACCAAAGGGAACCTCATCCTTCAACTAAGAGCATCAAAGTTTTTGAAGTTTCAGGAGGCCAAAATACAGGAGTTAGCTGAGCATGTCCCAAAAGGTCATATTCCAAGAACAATGACTATTCATTTCAGAGGAGAACTTACAAGAAAGGTTGCACCAGGAGATGTTGTTGAGTTGTCTGGGGTATTTCTTCCTATCCCTTACACTGGATTTAGAGCAATGCGAGCAGGCTTAGTTGCAGATACATACTTGGAGGCCATGTCTGTCTCGCATTTCAAGAAAAAATACGAGGAGTATGAATTTAGAGGTGACGAGGAAGAACAGATTGCACGCCTATCTGAGGATGGTGATATTTATAATAAGTTGGCCCGCTCATTAGCACCAGAAATTTTTGGGCACGAGGATGTTAAAAAAGCCTTGCTTCTTCTCTTGGTGGGGGCTCCTCATAAGAAGCTAAAAGATGGAATGAAGATAAGAGGAGATCTACATATCTGTTTGATGGGTGATCCTGGAGTAGCGAAAAGCCAGCTTCTTAAGCACATAATCAATGTTGCTCCAAGGGGTGTTTATACCACAGGCAGAGGAAGCAGTGGAGTAGGCCTCACTGCTGCTGTTCAGAAAGATCCTGTAACAAATGAGATGGTTCTAGAAGGGGGAGCATTGGTACTAGCAGATATGGGTATATGTGCTATTGATGAGTTTGACAAGATGGACGAGTCGGACCGAACAGCAATACATGAAGTAATGGAGCAGCAGACTGTTAGCATTGCCAAGGCTGGGATCACTACTTCTTTAAATGCAAGAACTGCTGTACTTGCTGCTGCTAATCCAGCATGGGGAAGATATGACATGCGGAGAACTCCAGCTGAAAATATTAACCTCCCTCCTGCCCTTCTATCAAGATTTGATCTTCTATGGCTGATCTTAGATCGGGCAGATATGGACAATGATCTCGAGATGGCTAGGCACATTGTTTATGTCCACCAGAATAAAGAATCTCCTGCTCTTGGGTTCAACCCCCTTGAACCTTCTGTTCTTCGGGCATATATTTCAGCTGCAAGAAAATTGTCTCCCTCCATCCCAAAGGAGCTGGAAGAGTATGTTGCTACAGCTTACTCCAGCATCAGGCAAGAAGAAGCAAAATCAAGTAGTCCACATTCCTATACAACCGTTAGAACTTTGCTCAGCATTCTTCGTATATCAGCTGCACTAGCCAGACTCCGGTTCTCAGATACTGTTGCTCAAAGTGATGTCGATGAGGCACTTAGGTTAATGCAGATGTCAAAATTTTCGTTGTATTCGGAAGATCGCCAGAAGTCTGGCCTGGATGCTATCTCTGATATCTACTCAATCTTGCGTGATGAAGCTGCAAGGGGTAACAAGATGGATGTGAGCTATGCCCATGCACTTAATTGGATTTCTAGAAAGGGATACAGTGAAGCCCAGTTGAAAGAATGTTTAGAGGAATATGCAGCTCTAAATGTGTGGCAGATCCATCCAAACACCTTCGATATCAGATTTATTGATGCCTGA

Network for GWHGAAZE000081

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14551.7	MCM_N	16	134	6.40E-15
PF17207.4	MCM_OB	145	275	3.90E-33
PF00493.24	MCM	316	538	8.70E-102
PF17855.2	MCM_lid	555	638	2.80E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02210	MCM7, CDC47	DNA replication	map03030
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006270	biological_process	DNA replication initiation
GO:0006260	biological_process	DNA replication
GO:0042555	cellular_component	MCM complex
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding
GO:0003678	molecular_function	DNA helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.361
	SRR3591706	second leaf	3.905
	SRR3591707	mature leaf	0.769
	SRR3591708	Shoot apex	32.664
	SRR3591709	Stem	4.742
	SRR3591710	White floral bud	1.252
	SRR3591711	White flower	2.391
	SRR3591712	Green floral bud	2.426
	SRR3591713	Yellow flower	1.172
SRP173429	SRR8316895	Juvenile bud stage	6.906
	SRR8316896	Juvenile bud stage	7.783
	SRR8316897	Juvenile bud stage	2.654
	SRR8316894	Third green stage	2.718
	SRR8316900	Third green stage	3.923
	SRR8316901	Third green stage	2.346
	SRR8316898	Complete white stage	0.248
	SRR8316899	Complete white stage	2.056
	SRR8316903	Complete white stage	0.330
	SRR8316902	Silver flowering stage	0.327
	SRR8316904	Silver flowering stage	0.314
	SRR8316905	Silver flowering stage	0.112
	SRR8316906	Gold flowering stage	0.084
	SRR8316907	Gold flowering stage	0.182
	SRR8316908	Gold flowering stage	0.431
SRP132670	SRR6706286	Control	2.645
	SRR6706287	Light intensity 50%	3.754
	SRR6706288	Light intensity 20%	4.228
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.084
	CNS0095593	Slightly white alabastrum(diploid) 2	3.451
	CNS0095594	Slightly white alabastrum(diploid) 3	3.523
	CNS0095595	Whole white alabastrum(diploid) 2	3.213
	CNS0095596	Whole white alabastrum(diploid) 3	1.520
	CNS0095597	Whole white alabastrum(diploid) 4	2.152
	CNS0095598	Silvery flower (diploied) 1	3.738
	CNS0095599	Silvery flower (diploied) 2	7.327
	CNS0095600	Silvery flower (diploied) 3	2.168
	CNS0095601	Golden flower (diploid) 1	1.699
	CNS0095602	Golden flower (diploid) 2	1.224
	CNS0095603	Golden flower (diploid) 3	0.917
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.413
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.020
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.970
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.337
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.482
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.276
	CNS0095610	Silvery flower (tetraploid) 1	1.710
	CNS0095611	Silvery flower (tetraploid) 2	1.380
	CNS0095612	Silvery flower (tetraploid) 3	1.692
	CNS0095613	Golden flower (tetraploid) 1	0.411
	CNS0095614	Golden flower (tetraploid) 2	0.985
	CNS0095615	Golden flower (tetraploid) 3	0.672
CRA001975	CRR073297	Stem 1	15.363
	CRR073298	Stem 2	11.164
	CRR073299	Stem 3	19.806
	CRR073300	Leaf 1	2.417
	CRR073301	Leaf 2	1.620
	CRR073302	Leaf 3	1.659
	CRR073303	Juvenile bud 1	1.852
	CRR073304	Juvenile bud 2	0.481
	CRR073305	Juvenile bud 3	2.042
	CRR073306	Third green 1	0.232
	CRR073307	Third green 2	0.214
	CRR073308	Third green 3	0.738
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.041
	CRR073311	Second white 3	0.032
	CRR073312	Silver flowering 1	0.069
	CRR073313	Silver flowering 2	0.055
	CRR073314	Silver flowering 3	0.061
	CRR073315	Gold flowering 1	1.802
	CRR073316	Gold flowering 2	1.260
	CRR073317	Gold flowering 3	1.449
	CRR073318	Tawny withering 1	12.928
	CRR073319	Tawny withering 2	11.997
	CRR073320	Tawny withering 3	19.471