Gene detail

Detail information of GWHGAAZE000082

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07743.1	0	unnamed protein product [Coffea canephora]
COG	YP_007117641.1	3E-31	multi-sensor hybrid histidine kinase
Swissprot	tr\|O22267\|CKI1_ARATH	0	Histidine kinase CKI1
trEMBL	tr\|A0A068UJG8\|A0A068UJG8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_27 {ECO:0000313\|EMBL:CDP07743.1}
TAIR10	AT2G47430.1	0	Signal transduction histidine kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	1770873	1776005	-
GWHAAZE00000001	mRNA	1770873	1776005	-
GWHAAZE00000001	exon	1775310	1776005	-
GWHAAZE00000001	exon	1774845	1775220	-
GWHAAZE00000001	exon	1774130	1774704	-
GWHAAZE00000001	exon	1772140	1773285	-
GWHAAZE00000001	exon	1771541	1771742	-
GWHAAZE00000001	exon	1770873	1770910	-
GWHAAZE00000001	CDS	1775310	1776005	-
GWHAAZE00000001	CDS	1774845	1775220	-
GWHAAZE00000001	CDS	1774130	1774704	-
GWHAAZE00000001	CDS	1772140	1773285	-
GWHAAZE00000001	CDS	1771541	1771742	-
GWHAAZE00000001	CDS	1770873	1770910	-

Transcript Sequence
>GWHTAAZE000082 ATGCAGGTTGCTCCATCACTGTTTCAAGCATTATCAGCAATACCTCACATGTCACAAATTACATATATTGGCATGGATGGTCTTTTCTTCTCGTACTACAAGAAGAATGATCAACAACCTTTTGCCATATATTCAAATTCTTTGATTTCTCTTAATACCACAAAAATGTATACTTGGTACACTAGGCCTGTGAATCGATTCTCAGGAAAACTACAAGGAGCAGCTATAAAATCTCGTCCTAAATTTATACCCAGTACAGATTGGTTTCGAAAAGCATTGAATAGTACAAATGGAAACGCTTCATTAGGAACAATGTGGACCGATGATAAATATCTTTTGATCTTGAATAGGGCTAGCATAAAAGGAAGAGGAGTCATCTATATAGGCTTTGAAACTACTTCATTAATAAATTTCTTCTCTGACGTATATCGCATCAATGGAAGTGCTTTTTATTTGGCGACAAAAGAGGGAAAAGTGCTTTGGGAATTAGGGATCCCAAACACGCATGTGGTCCTTGTTGGTGATTCTGTTTCATTTCAATTACCAAATCCAAATGGTGACCAAATGATCATTATTGGTAATGTTACATGTCAACAAAATGATGGTACCAGTACCTTGCAACCTTCTATGTTGAACATCTTGGGGCAAAATTATATATTTTATTGTACCACTCTTCAAATAGTTGGAGTTCAGTCGGTTTTTGTATTGGCTTTACCAAACAAGGGACCAGAGACCTTTATTCACGAAAATATCAACTTTGCGTTCCTTTTACTTTTAGTTTTGATTGGCGTAGTGGTGTTTGCTATTTTGGCTTTCGCATTCTTAATTGTTAGAGCAGCATCGAGAGAGATGCACTTGTGTGCAACACTTATAAAGCAAATGGAAGCGACTAGTCATGCAGAAAGAAAAGGCATGAATAAGAGTATCGCCTTTGCCGGTGTAAGCCACGACGTGCGTGCTTCTCTAGCCGGAATTGAAGGGTTGATAGAGATTTGTCACCATGAAGTTGCCCATGGATCCGAGTTAGAGTCCAATTTAGTCCACATGGAAACTTGTACAAAGGACCTCTTAGCTTTATTGAATTCTATTCTTGATACAAGCAAGATTGAAGCTGGGAAGATGCAACTTGAAATAGAAGAATTTGACATGGCACAATTGCTTGAAAGTGAGGTCGATTTATTCTATTCAGTTGGAATGAAAAAGGGTGTAGATGTGATTTTGGATCTGTATGATGGCTCAATTACAAAATTTTCTCGTGTTAAAGGCGATCATGGTAAGCTTAAACAAATACTAAGTAACTTATTGAGCAATGCTGTGAAATTTACCTCGGAGGGGCATGTATTTGTTCGAGCTTGGGCCAAGAAACCTAGTTTGGAAAATTCAATTATTTCTTCCACTCAGAATCATTTATTAAAATGCTTATCGTGTTTCTTCTTCAAGAACGATGGAGTATACAATGACGTCGAATCCACCCATGCAATCCAAAAAGATCCTAATTGTATGGAGTTTGTATTTGAGGTGAACGACACAGGAAAGGGGATTCCAAAGGAGAAACATAAATCTATTTTTGAAGATTATGTTCAGGTCAAAGAGACTACTCTTAAACAAGAAGGCACCGGATTGGGGCTTGGGATCGTTCAATCTTTGGTGAGGCTGATGGGAGGAGAGATAATGATTGTGGAAAAGGAAGTAGGCGAAAAAGGAACTTGCTTTAGGTTCAGTGTCTTTTTGATAACATGTAATGACGAGATTGAGATAAATGGCTATAATGTTGTACGAGAAGATGACATCGAATCGAGTTACATGTCAAGTGACTCGTATCAGCACTCATGGCCAAGTATTCGTCTCCCTAGCCCCAAAGTGGAAGGGTCCCACATAGTGCTTTTTATTCAGAATGAAGAAAGGCGTAAGATTTCACGTAGATTCATGGAAAGACAAGGGTTAAAAGTGTCCGTTGTAATGAATTTAGAGCAGCTTTCTACTACTCTCAAGAAAATTAAAAGCAGATACACGTTTATGCGTTACAGCTCTTCAGGTAGATCATACACGGTCTCAAGAAGTAACTCAAGCCCTAGATTGAAGGAGGTGCCTTTAAGTTCTCTAGACGGAACAGATGAAATGCCTTTACCGCTCCAAAGGAGGACTAATCTTAGAGGGGTGCCAAATTTCACATTAATTGTGATAGACACAAGTGGTGGGCCATTTCGAGAGTTAAGTAGGGCTGTGGCTGACTTTAGAAAAGATCTATGTCTTGATTATAATAGAGTTGTTTGGATAAATAAACCGGGTGTTCATAGCATTCATGTTCAAGGCCTCGACGAGCATAAACTCCCTCCAAGTGATTTGATCATAACGAAACCATTTCATGGGTCCCGTTTGAATCAAGTTATAGAACTTTTGCCGGAGTTTGCGAATGTAATGCCGCAAAAAACACGCCCAAATATAAATTTTCCATCAGAATCAACTGCTTCAACACCTCAGGCTCAAACAAGTTCGAACTTAAGAAATTCTCCATCTCAAAAAGAAAAAACCAAAAATGGGGAAATACAAGAAATTGGTGAACCATGCAATGGAAGTGAAATGTATTTAAAAGGGAAGAAAGTTTTGGTGGCCGAAGATAATCAAGTGTTGTGTAAAGTGGCCGTGGCTCTGCTTAAGAGGCTTGGTGCAATTGTTGTTAAATGTGGAAATGGCGAAGAAGCTCTAGAACTAGTCCGTAATGGCCTAATGGATCAACGGAGACATCGAGCTTCTCATACTCCACCTTATGATTACATATTTATGGATTGTGAGATGCCAGTTATGGATGGGTACGAAGCAACAAGACGGATACGCAACGAGGAGAAGTATTATGGGGTTCACATCCCCATCATTGCATTGACTGCTCATACAGCAGGTGAGGAAACACAGATGATTATTCAAGCTGGAATGGACGTTCATTTGCCAAAACCACTAAGAAGAGAGACCCTATTGGAAGCCATGGCATATATCCAAAGTAAAGGGGTCTTGCAAGCTGCAAAGCAATACATTTGA

Network for GWHGAAZE000082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0319

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00512.26	HisKA	310	372	1.80E-06
PF02518.27	HATPase_c	422	575	6.30E-26
PF00072.25	Response_reg	868	994	6.30E-21

Protein Sequence

>GWHPAAZE000082
MQVAPSLFQALSAIPHMSQITYIGMDGLFFSYYKKNDQQPFAIYSNSLISLNTTKMYTWYTRPVNRFSGKLQGAAIKSRPKFIPSTDWFRKALNSTNGNASLGTMWTDDKYLLILNRASIKGRGVIYIGFETTSLINFFSDVYRINGSAFYLATKEGKVLWELGIPNTHVVLVGDSVSFQLPNPNGDQMIIIGNVTCQQNDGTSTLQPSMLNILGQNYIFYCTTLQIVGVQSVFVLALPNKGPETFIHENINFAFLLLLVLIGVVVFAILAFAFLIVRAASREMHLCATLIKQMEATSHAERKGMNKSIAFAGVSHDVRASLAGIEGLIEICHHEVAHGSELESNLVHMETCTKDLLALLNSILDTSKIEAGKMQLEIEEFDMAQLLESEVDLFYSVGMKKGVDVILDLYDGSITKFSRVKGDHGKLKQILSNLLSNAVKFTSEGHVFVRAWAKKPSLENSIISSTQNHLLKCLSCFFFKNDGVYNDVESTHAIQKDPNCMEFVFEVNDTGKGIPKEKHKSIFEDYVQVKETTLKQEGTGLGLGIVQSLVRLMGGEIMIVEKEVGEKGTCFRFSVFLITCNDEIEINGYNVVREDDIESSYMSSDSYQHSWPSIRLPSPKVEGSHIVLFIQNEERRKISRRFMERQGLKVSVVMNLEQLSTTLKKIKSRYTFMRYSSSGRSYTVSRSNSSPRLKEVPLSSLDGTDEMPLPLQRRTNLRGVPNFTLIVIDTSGGPFRELSRAVADFRKDLCLDYNRVVWINKPGVHSIHVQGLDEHKLPPSDLIITKPFHGSRLNQVIELLPEFANVMPQKTRPNINFPSESTASTPQAQTSSNLRNSPSQKEKTKNGEIQEIGEPCNGSEMYLKGKKVLVAEDNQVLCKVAVALLKRLGAIVVKCGNGEEALELVRNGLMDQRRHRASHTPPYDYIFMDCEMPVMDGYEATRRIRNEEKYYGVHIPIIALTAHTAGEETQMIIQAGMDVHLPKPLRRETLLEAMAYIQSKGVLQAAKQYI

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0016310	biological_process	phosphorylation
GO:0000155	molecular_function	phosphorelay sensor kinase activity
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.015
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.078
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000