Gene detail

Detail information of GWHGAAZE000083

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275930.1	0	PREDICTED: DNA mismatch repair protein MSH6 [Vitis vinifera]
COG	YP_566347.1	2E-74	DNA mismatch repair protein MutS
Swissprot	tr\|O04716\|MSH6_ARATH	0	DNA mismatch repair protein MSH6
trEMBL	tr\|F6HZ94\|F6HZ94_VITVI	0	DNA mismatch repair protein MSH6 {ECO:0000256\|PIRNR:PIRNR037677}
TAIR10	AT4G02070.1	0	MUTS homolog 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	1823567	1835017	+
GWHAAZE00000001	mRNA	1823567	1835017	+
GWHAAZE00000001	exon	1823567	1824401	+
GWHAAZE00000001	exon	1825784	1825838	+
GWHAAZE00000001	exon	1826748	1826850	+
GWHAAZE00000001	exon	1826940	1827167	+
GWHAAZE00000001	exon	1827427	1827495	+
GWHAAZE00000001	exon	1827637	1827720	+
GWHAAZE00000001	exon	1827850	1828041	+
GWHAAZE00000001	exon	1828684	1829234	+
GWHAAZE00000001	exon	1829374	1829503	+
GWHAAZE00000001	exon	1830256	1830347	+
GWHAAZE00000001	exon	1830440	1830630	+
GWHAAZE00000001	exon	1830720	1830895	+
GWHAAZE00000001	exon	1830991	1831092	+
GWHAAZE00000001	exon	1832806	1832968	+
GWHAAZE00000001	exon	1833351	1833637	+
GWHAAZE00000001	exon	1833713	1833850	+
GWHAAZE00000001	exon	1834630	1834709	+
GWHAAZE00000001	exon	1834912	1835017	+
GWHAAZE00000001	CDS	1823567	1824401	+
GWHAAZE00000001	CDS	1825784	1825838	+
GWHAAZE00000001	CDS	1826748	1826850	+
GWHAAZE00000001	CDS	1826940	1827167	+
GWHAAZE00000001	CDS	1827427	1827495	+
GWHAAZE00000001	CDS	1827637	1827720	+
GWHAAZE00000001	CDS	1827850	1828041	+
GWHAAZE00000001	CDS	1828684	1829234	+
GWHAAZE00000001	CDS	1829374	1829503	+
GWHAAZE00000001	CDS	1830256	1830347	+
GWHAAZE00000001	CDS	1830440	1830630	+
GWHAAZE00000001	CDS	1830720	1830895	+
GWHAAZE00000001	CDS	1830991	1831092	+
GWHAAZE00000001	CDS	1832806	1832968	+
GWHAAZE00000001	CDS	1833351	1833637	+
GWHAAZE00000001	CDS	1833713	1833850	+
GWHAAZE00000001	CDS	1834630	1834709	+
GWHAAZE00000001	CDS	1834912	1835017	+

Transcript Sequence
>GWHTAAZE000083 ATGGCAACTTCCCGTCGATCAACCAATGGCCGTTCACCACTTGTCAATCAACAACGCCAAATCACCTCCTTCTTCAACAAATCGTCCTCTTCTCCTTCACCCTCCCCTGTACTCTCCAAACTTTCCCCAAACCCTAACCCTAACCCTAACCCTAACCCTAAATCAAAACCTAGCCTCAGCCCTGGCTCCAGCCCAAACACTCCATCTCCTCTCCAAAATAAACGCAAAAAGCCGCTCTTAGTCATTGGCCACTCTCCAGCTACTCCGTCAGATTCCACCAAGGTTACCAAGAAATCATACGGTGACGAAGTGGTGAACAAGAGAGTTAGGGTTTATTGGCCGTTGGACCAGTCGTGGTACGAAGGTTGTGTTAGGTCTTTCGATAAGACTACCGGTAAGCATCTGGTTCAGTATGATGATGCTGAAGAGGAGTGTTTGGATATTGATAAGGAGAAGATTGAGTGGGTGCAGGAACCTGTGAAAAGGTTTCGCCGATTGCGTAAAGCTTCCGTGGTGGAAGATGAAGATGAAGTAGTGGAAAATGTTGAGGATGATTCTGCGGATGAAGATTGGGGGAAGAATGCAGAGAAAGAAGAGGTTGACTGTGAATCAGAGGATATGGATTTGGTGGATGAGGAAGATGATGATGATGCAGTTGAGACTGTGAAAAGAACACCTGCTAAAAGGCCAGAGTCGAGAAAGAGGAAAACGTGTGTAATCGACAAGTTAGGGTCTAATAAGAAGAGTAAGAGTGGCGGAGACGCCAGCAAGAGTGCAGGCAAGGTTTCCTTAGATATCATCGGAAGGAAATTGACGGAGCCTGCCATTAATAATGGAGGGAATGCATCCCCTCTTGCTGATAACGCTCTAGTGGGTGATGCTGCAGAAAGAGATTGTAGGGATGCTAATAGAAGACATCCTGGAGACGAAAATTATGACCCTAAAACTCTATTTTTGCCTCCTGATTTCTTGAAGAGCTTAACAGGTGGCCAGAGACAATGGTGGGAGTTTAAGTCAAAGCATATGGATAAGGTTCTATTCTTCAAGGTAATTGCTGGAGTTCACGTAATGTTACAAATCCCAGTGGTTGTCTGTTTTTTCTGTTGCTCTCGTCAATCAATTGATAGATATTTGTTGGTGGAACAGATGGGCAAGTTTTATGAGCTTTTCGAAATGGATGCACATGTAGGAGCAAAAGAACTTGATTTGCAATATATGAAGGGAATACAACCTCACTGTGGATTTCCGGAAAAGAACTTCTCAATGAATGTAGAGAAGCTGGCTAGAAAGGGTTACCGGGTTCTTGTTGTGGAGCAAACAGAGACACCTGAACAGCTTGAGCTTCGTCGCAAACAGAAAGGTTCCAAAGATAAGGTTGTGAAACGTGAAATATGTGCAGTGGTCACAAAAGGAACGTTAACTGAGGGAGAAATGCTGTCAGCAAACCCTGATGCTTCTTATTTGATGGCAGTGACAGAAAGTTGTCATATTTCACCAAAGCAACAGGAGCGAATCTTTGGTGTTTGTGTGGCTGATGTTGCTGCAAGCAAGATTATCCTTGGACAGTTTGTGGATGATTCAGAGTGCAGTGCCTTGAGTTGTCTATTGTCCGAACTAAGACCAGTGGAAATTATAAAACCTTCTAAACAGCTTAGTCCTGAAACTGAGAGAGTACTACTGAGATATACGAGAAGTCCTTTAGTAAATGAGTTAGTTCCACTCTTGGAGTTCTGGGATGCTGAGAAAACTACCAATGAAGTCAAGGCTGTGTACATGCGCATCAATGGTCAGACAAAGTCTTCATCTTTGAATGAAGCAATTTCACATGCTACTGATTCCTCAGTCGAAGATGGGAGCGTGGACATTCTACCAAATATTTTGAGTGAGCTTGTGAGTGCCCGCGAGAATGGCATGCATGCACTTTCAGCTCTTGGAGGCACTCTTTTCTACCTGAAGCAGGCTTTTCTGGAAGAATCATTGCTTAGATTTGCAAAATTTGAGTTACTTCCATGCTCTGGTTTCAGTGATATCATGCAAAAACCGTACATGGTTCTTGATGCAGCCTCACTGGAGAACCTTGAGATATTTGAGAACAACAGAAATGGGGACTCTTCAGGGACATTGTATGCTCAATTGAACCACTGTGTTACGGCATTTGGGAAGAGGTTGCTTAAATCGTGGCTCGCAAGACCTTTGTATAATGTGGGTTTGATTAGGGAACGCCAGGATGCTGTAGCAGGTTTAAAGGGAGTTAATTTACCTTTTGTACTAGAATTTCGGAAAGAATTGTCCAGGCTTCAAGACATGGAACGATTCCTTGCACGTATATTTTCTAGCAGTGAATGTAATGGAAGAAATGCAAATAATGTCATTCTATATGAGGATGCAGCAAAGAAACAACTTAAAGAGTTCATATCAGCATTACGTGGTTGTGAGATAATGATCCATGCATGCTCTTCAATGGGTGTCATTCTGAAAAATGTTGATTCTGGGCTATTACACCATTTATTAACTCCTGGTATAATTGGCATTCTAAAGCATTTCAAAGAGGCCTTTGATTGGGATGAAGCAAATAGTACAGGCCGTATAATACCTCGAGAAGGGGTTGATACTGAGTTTGACTCTGCCTGCAAAGCGGTTAAGGAAATTGATGCCAGTTTGGAGACGCACTTGAAAGAACAACGGGCACTACTTGGAAATAAATCAATCAACTATGTAACAATTGGAAAAGATGCATACCTTTTGGAGGTGCCAGAAAGTTTGTGTGGGAGCATCCCTCGGGATTATGAGCTGCAATCATCAAAAAAAGGTTTCTTCCGGTACTGGAATCCAGTTATTAAAACACTCATAAGAGAGCTTTCTCATGCTGAGTTGGAAAAGGAGTCCAAGTTGAAAAGCATTTTGCAGAGGTTGGTTGGACGTTTCTGCGAGTATCATAATAAGTGGCGACAATTGGTTTCTACTACTGCAGAACTTGATGTTTTGATGAGCTTAGCAATTGCAAGTGACTATTACGAAGGACCAACATGCCGTCCAATTATCTCAGCTTTATCAGGTCCAAATGAAGTGCCAAGCTTTAGAGCTAAAAGTTTAGGACATCCTGTTATCACAAGTGATTCTCTGGGGAGGGGTGCCTTTGTCCCCAATGATGTTAATATTGGTGGTTCTGGTCCTACCTTCATTCTGCTTACTGGTCCTAACATGGGTGGAAAGTCAACTCTTTTGCGTCAAGTTTGCTTGGCTGTGATTTTGGCCCAGGTAGGAGCAGATGTACCCGCAGAGAGCTTTGAGATGTCTCCTGTTGACCATATTTTTGTACGAATGGGTGCAAAAGATCATATTATGGCAGGCCAAAGTACCTTTCTAACAGAGCTTTTAGAAACGGCAAAGATGCTGTCGTCCGCAACCCGCAATTCACTTGTTGCATTGGATGAACTTGGACGAGGGACATCAACTTCTGATGGGCAAGCCATAGCAGAATCGGTTCTTGAACATTTTGTCAACAAGGTACAGTGTCGAGGCATGTTTTCTACACACTATCATCGATTATCTCTGGATTATCAGAAAGATAGTAAGGTATAG

Network for GWHGAAZE000083

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01624.21	MutS_I	369	476	8.60E-25
PF05188.18	MutS_II	486	566	1.10E-07
PF05192.19	MutS_III	689	999	1.50E-34
PF05190.19	MutS_IV	868	957	2.10E-12
PF00488.22	MutS_V	1062	1189	6.60E-53

Protein Sequence

>GWHPAAZE000083
MATSRRSTNGRSPLVNQQRQITSFFNKSSSSPSPSPVLSKLSPNPNPNPNPNPKSKPSLSPGSSPNTPSPLQNKRKKPLLVIGHSPATPSDSTKVTKKSYGDEVVNKRVRVYWPLDQSWYEGCVRSFDKTTGKHLVQYDDAEEECLDIDKEKIEWVQEPVKRFRRLRKASVVEDEDEVVENVEDDSADEDWGKNAEKEEVDCESEDMDLVDEEDDDDAVETVKRTPAKRPESRKRKTCVIDKLGSNKKSKSGGDASKSAGKVSLDIIGRKLTEPAINNGGNASPLADNALVGDAAERDCRDANRRHPGDENYDPKTLFLPPDFLKSLTGGQRQWWEFKSKHMDKVLFFKVIAGVHVMLQIPVVVCFFCCSRQSIDRYLLVEQMGKFYELFEMDAHVGAKELDLQYMKGIQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKQKGSKDKVVKREICAVVTKGTLTEGEMLSANPDASYLMAVTESCHISPKQQERIFGVCVADVAASKIILGQFVDDSECSALSCLLSELRPVEIIKPSKQLSPETERVLLRYTRSPLVNELVPLLEFWDAEKTTNEVKAVYMRINGQTKSSSLNEAISHATDSSVEDGSVDILPNILSELVSARENGMHALSALGGTLFYLKQAFLEESLLRFAKFELLPCSGFSDIMQKPYMVLDAASLENLEIFENNRNGDSSGTLYAQLNHCVTAFGKRLLKSWLARPLYNVGLIRERQDAVAGLKGVNLPFVLEFRKELSRLQDMERFLARIFSSSECNGRNANNVILYEDAAKKQLKEFISALRGCEIMIHACSSMGVILKNVDSGLLHHLLTPGIIGILKHFKEAFDWDEANSTGRIIPREGVDTEFDSACKAVKEIDASLETHLKEQRALLGNKSINYVTIGKDAYLLEVPESLCGSIPRDYELQSSKKGFFRYWNPVIKTLIRELSHAELEKESKLKSILQRLVGRFCEYHNKWRQLVSTTAELDVLMSLAIASDYYEGPTCRPIISALSGPNEVPSFRAKSLGHPVITSDSLGRGAFVPNDVNIGGSGPTFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFEMSPVDHIFVRMGAKDHIMAGQSTFLTELLETAKMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHFVNKVQCRGMFSTHYHRLSLDYQKDSKV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08737	MSH6	Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006298	biological_process	mismatch repair
GO:0005524	molecular_function	ATP binding
GO:0030983	molecular_function	mismatched DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.934
	SRR3591706	second leaf	3.001
	SRR3591707	mature leaf	3.796
	SRR3591708	Shoot apex	8.968
	SRR3591709	Stem	5.718
	SRR3591710	White floral bud	5.499
	SRR3591711	White flower	6.329
	SRR3591712	Green floral bud	3.889
	SRR3591713	Yellow flower	4.256
SRP173429	SRR8316895	Juvenile bud stage	3.701
	SRR8316896	Juvenile bud stage	5.032
	SRR8316897	Juvenile bud stage	1.825
	SRR8316894	Third green stage	1.507
	SRR8316900	Third green stage	3.180
	SRR8316901	Third green stage	3.244
	SRR8316898	Complete white stage	1.357
	SRR8316899	Complete white stage	3.870
	SRR8316903	Complete white stage	3.543
	SRR8316902	Silver flowering stage	2.627
	SRR8316904	Silver flowering stage	5.342
	SRR8316905	Silver flowering stage	2.134
	SRR8316906	Gold flowering stage	4.378
	SRR8316907	Gold flowering stage	4.604
	SRR8316908	Gold flowering stage	4.089
SRP132670	SRR6706286	Control	2.768
	SRR6706287	Light intensity 50%	3.191
	SRR6706288	Light intensity 20%	3.233
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.665
	CNS0095593	Slightly white alabastrum(diploid) 2	2.199
	CNS0095594	Slightly white alabastrum(diploid) 3	1.508
	CNS0095595	Whole white alabastrum(diploid) 2	1.520
	CNS0095596	Whole white alabastrum(diploid) 3	0.759
	CNS0095597	Whole white alabastrum(diploid) 4	1.367
	CNS0095598	Silvery flower (diploied) 1	3.005
	CNS0095599	Silvery flower (diploied) 2	3.243
	CNS0095600	Silvery flower (diploied) 3	5.852
	CNS0095601	Golden flower (diploid) 1	2.194
	CNS0095602	Golden flower (diploid) 2	3.375
	CNS0095603	Golden flower (diploid) 3	3.471
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.962
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.206
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.763
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.263
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.875
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.243
	CNS0095610	Silvery flower (tetraploid) 1	4.079
	CNS0095611	Silvery flower (tetraploid) 2	4.522
	CNS0095612	Silvery flower (tetraploid) 3	6.476
	CNS0095613	Golden flower (tetraploid) 1	0.975
	CNS0095614	Golden flower (tetraploid) 2	2.230
	CNS0095615	Golden flower (tetraploid) 3	1.710
CRA001975	CRR073297	Stem 1	5.471
	CRR073298	Stem 2	4.148
	CRR073299	Stem 3	4.054
	CRR073300	Leaf 1	3.470
	CRR073301	Leaf 2	2.813
	CRR073302	Leaf 3	2.181
	CRR073303	Juvenile bud 1	1.934
	CRR073304	Juvenile bud 2	0.914
	CRR073305	Juvenile bud 3	3.920
	CRR073306	Third green 1	4.213
	CRR073307	Third green 2	2.907
	CRR073308	Third green 3	3.350
	CRR073309	Second white 1	3.491
	CRR073310	Second white 2	3.801
	CRR073311	Second white 3	4.497
	CRR073312	Silver flowering 1	2.167
	CRR073313	Silver flowering 2	2.384
	CRR073314	Silver flowering 3	2.416
	CRR073315	Gold flowering 1	1.314
	CRR073316	Gold flowering 2	2.984
	CRR073317	Gold flowering 3	1.650
	CRR073318	Tawny withering 1	3.485
	CRR073319	Tawny withering 2	2.216
	CRR073320	Tawny withering 3	4.173