Detail information of GWHGAAZE000096


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010652225.10PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Vitis vinifera]
Swissprottr|Q9SY66|FRS11_ARATH0Protein FAR1-RELATED SEQUENCE 11
trEMBLtr|F6HZ84|F6HZ84_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB59999.1}
TAIR10AT1G10240.10FAR1-related sequence 11

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene20370062040968+
GWHAAZE00000001mRNA20370062040968+
GWHAAZE00000001exon20370062037017+
GWHAAZE00000001exon20378132038820+
GWHAAZE00000001exon20392972039740+
GWHAAZE00000001exon20400842040968+
GWHAAZE00000001CDS20370062037017+
GWHAAZE00000001CDS20378132038820+
GWHAAZE00000001CDS20392972039740+
GWHAAZE00000001CDS20400842040968+
Transcript Sequence

Network for GWHGAAZE000096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1761693.00E-18
PF10551.10MULE2923841.70E-19
PF04434.18SWIM5776012.30E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE000096.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30246810121416182022Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.975
SRR3591706second leaf7.503
SRR3591707mature leaf8.370
SRR3591708Shoot apex15.090
SRR3591709Stem12.977
SRR3591710White floral bud11.692
SRR3591711White flower12.604
SRR3591712Green floral bud15.845
SRR3591713Yellow flower13.116
SRP173429 SRR8316895Juvenile bud stage 7.951
SRR8316896Juvenile bud stage 11.613
SRR8316897Juvenile bud stage 5.835
SRR8316894Third green stage 4.584
SRR8316900Third green stage 12.919
SRR8316901Third green stage 12.005
SRR8316898Complete white stage 3.813
SRR8316899Complete white stage 16.502
SRR8316903Complete white stage 6.926
SRR8316902Silver flowering stage3.772
SRR8316904Silver flowering stage6.580
SRR8316905Silver flowering stage2.997
SRR8316906Gold flowering stage 9.207
SRR8316907Gold flowering stage 7.280
SRR8316908Gold flowering stage 9.445
SRP132670SRR6706286Control7.590
SRR6706287Light intensity 50%7.897
SRR6706288Light intensity 20%8.616
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.710
CNS0095593Slightly white alabastrum(diploid) 26.305
CNS0095594Slightly white alabastrum(diploid) 36.063
CNS0095595Whole white alabastrum(diploid) 27.869
CNS0095596Whole white alabastrum(diploid) 37.703
CNS0095597Whole white alabastrum(diploid) 48.760
CNS0095598Silvery flower (diploied) 111.595
CNS0095599Silvery flower (diploied) 28.918
CNS0095600Silvery flower (diploied) 316.035
CNS0095601Golden flower (diploid) 113.385
CNS0095602Golden flower (diploid) 219.761
CNS0095603Golden flower (diploid) 318.430
CNS0095604Slightly white alabastrum(tetraploid) 111.158
CNS0095605Slightly white alabastrum(tetraploid) 28.584
CNS0095606Slightly white alabastrum(tetraploid) 313.969
CNS0095607Whole white alabastrum(tetraploid) 111.481
CNS0095608Whole white alabastrum(tetraploid) 212.650
CNS0095609Whole white alabastrum(tetraploid) 315.632
CNS0095610Silvery flower (tetraploid) 114.201
CNS0095611Silvery flower (tetraploid) 214.014
CNS0095612Silvery flower (tetraploid) 313.012
CNS0095613Golden flower (tetraploid) 18.966
CNS0095614Golden flower (tetraploid) 212.081
CNS0095615Golden flower (tetraploid) 313.052
CRA001975CRR073297Stem 113.144
CRR073298Stem 29.899
CRR073299Stem 39.125
CRR073300Leaf 114.361
CRR073301Leaf 212.118
CRR073302Leaf 39.555
CRR073303Juvenile bud 18.820
CRR073304Juvenile bud 29.303
CRR073305Juvenile bud 310.023
CRR073306Third green 15.962
CRR073307Third green 23.759
CRR073308Third green 33.818
CRR073309Second white 14.812
CRR073310Second white 24.578
CRR073311Second white 35.373
CRR073312Silver flowering 13.000
CRR073313Silver flowering 24.720
CRR073314Silver flowering 33.532
CRR073315Gold flowering 13.941
CRR073316Gold flowering 27.370
CRR073317Gold flowering 35.429
CRR073318Tawny withering 19.443
CRR073319Tawny withering 28.417
CRR073320Tawny withering 37.830