Gene detail

Detail information of GWHGAAZE000105

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006359883.1	0	PREDICTED: cellulose synthase-like protein D5-like [Solanum tuberosum]
COG	NP_487797.1	1E-18	cellulose synthase catalytic subunit
Swissprot	tr\|Q9SRW9\|CSLD5_ARATH	0	Cellulose synthase-like protein D5
trEMBL	tr\|M1D4L5\|M1D4L5_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400081337}
TAIR10	AT1G02730.1	0	cellulose synthase-like D5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	2135860	2140017	-
GWHAAZE00000001	mRNA	2135860	2140017	-
GWHAAZE00000001	exon	2135860	2137626	-
GWHAAZE00000001	exon	2137711	2138521	-
GWHAAZE00000001	exon	2139095	2140017	-
GWHAAZE00000001	CDS	2139095	2140017	-
GWHAAZE00000001	CDS	2137711	2138521	-
GWHAAZE00000001	CDS	2135860	2137626	-

Transcript Sequence
>GWHTAAZE000105 ATGGTAATAATGTCTTACGATTCTCCATCTTCATCTCCGGTGAAAATTACAATCTCTACTTCCGGAGGATCACGTATTGGCCTGACCAGTCCGGTGCCTCGCCATTCCTTGTCAAATAACCCTAATTCTCCCCTCTCCGGCAGAGGATTTGGGGATTCCGGTGATCGCCGTAGAGATTCCGGCTGTGGAAAGTTTGTTACCATGTCTAAAGACAGTAGGGATGAGTTTGTAGCTTATACAGTTCAAATCCCCTCAACCCCAGATCATCAATTCATGTCCGAGTCTCAAAGTAGCCCTAAAAGCCATGAAAACCCTAATGATAGCTTCATCAAGAACACTACATATACAGGAGGATTCAATTCGGTGACTAAAACCCATGTGAGGGTGAAATCGGAGGAAGAGCAGGTGGAATTGAAATCCAAATTGCTTTGTGGAATGGAGGGCTGTGATGAGAAATTAGTAGAGGGTGATAATCAATGTGAATGTGGGTATAGAATTTGTAGAGATTGTTTTTTTGATTGCACTGAAAATGGAGGTGGGTATTGTCCTGGTTGTAAAGAACCCTATAGGGATGCTGGGGAAGAAGAGAGTGATGTTGATGATGATGATGAGCCTAAATCTGAAGAAAAGGATTTGGCTAATTCACTTCCTAGAAAGGGGAGAGGAGGTGGGGTTTGGTTGGATAAGAAGTTTTCGCTCGTGCAGTCGTTTAAGGCTCCGAATCAAGAGTTTGATCACAATAGATGGCTTTTTGAGACTCATGGGACTTATGGATTTGGTAATGCTGTGTGGCCTAGAGATGGCTATGAATTTGAGAGAGGGACTAATAATGGGTATGAAAATCCTCCAAATTTCAATCAGAGAAGAAACAGGCCTTTAACAAGGAAGGTTGGGATTTCTGCTGCAATTATCAGTCCATACAGATTGCTTATGGTATTACGCCTTGCTGCTCTTGTTTGCTTCCTGACATGGAGGATTTCAAATCCCAATCGTGATGCACTTTGGTTATGGATGATGTCTGTGGTCTGTGAAGTATGGTTTGCACTTTCTTGGCTTCTCGATCAGCTACCAAAACTCTGCCCCGTAAAAAGAGTGACTGACCTCTCTGTTTTAAAAGACCGGTTTGAATCCTCAGAAACAAACCCGCTTCATCCCAAAGGATTATCAGACCTTCCAGGGATTGATATATTTGTTTCAACAGCCGACGCAGAAAAAGAACCTCCTCTTGTCACTGCAAACACAATTCTTTCAATCCTAGCCGTTGATTATCCTGTCGAAAAGCTAGCATGTTATCTATCTGACGATGGAGGCTCTCTCGTGACGTTTGAAGCACTTGCAGAGGCTGCAAGCTTTGCAAAAATATGGGTCCCTTTCTGCAGGAAGCACAACATAGAACCCAGAAACCCCGAGGCGTACTTTGGCCAGAAGCGCGATCCACTCAAGAACAAAGTGCGTCTCGATTTTGTTAGGGAAAGGAGACGTGTTAAGCGCGAATATGACGAATTCAAGGTCAGGATAAATGCCTTACCTGAATCTATAAGGCGAAGATCAGACGCCTTTAATGCCCAAGCAGAGATAAAAGCAAAGAAACAGCAGAGGGAAATTGGGGAAAATCCTTTTGAACCCATTAAGGTCCCTAGAGCTACTTATATGTCCGATGGACAACAGTGGCACGGAAGTTGGTCATCCCCAGAGGCTGAACATTCAAAAGGGGATCATGCTGGTATAATTCAGATAATGTTGGTTCCCCCGAAGCCTGAGACTGTTTTTGGGACAGATGATGATGATAAGGAGAATCTAATTGACGCAAAAGAAGTTGATACAAGATTGCCAATGCTGGTTTACGTGTCCCGAGAGAAGCGGCCAGGTTATGATCACAACAAGAAAGCTGGAGCAATGAATGCCCTCGTACGTGCCAGCGCTATCATGTCCAATGGACCATTCATTCTTAATCTCGATTGTGACCACTACATCTACAACTCCTCGGCTTTGAGAGAAGGAATGTGCTTCATGCTCGACCGGGGCGGAGACAAGATTTGTTATGTTCAGTTCCCACAGAGGTTTGAAGGGATCGATCCGAGTGATCGATACGCAAACCACAATACGGTGTTCTTTGATGTGAGCATGAGAGCCCTGGATGGATTACAAGGTCCAATGTATGTGGGGACGGGCTGCATTTTCCGGCGAATCGCTCTATACGGGTTTAGCCCACCTCGAGCCACAGAGCACCACGGGTGGTTTGGTGGTAGGAAAATTAAGATGTCTTTGAGAAAGCCGAAGGTGCCAAAGAACCACGATGATGATGAGATGATTCTGCCCATTATAGGGGACAGAAATCAGGGGGATGAATTTATCAAGGCCTTGATTCCCGAACGATTCGGTGATTCTACTCATTTGATGGATTCTATTGCTGTAGCCGAATTTGGGGGGAGGTTGATCCATGAGTTGAGAGGTAAAGATAGCCAGGGAAGACCGGCCGGTTCACTTGCCGTGCAACGTGAGCCGTTGGATTCTACAGCTATTGCTGAGGCAATCAAGGTTATAACTTGCTTCTACGAGGACAAAACAGAGTGGGGCAAAAGGGTGGGTTGGATTTATGGTTCTATAACTGAAGATGTCGTGACGGGTTATCGGATGCACAACCGAGGGTGGAGATCTGTTTATTGTGTCACCAAAAGGGATGCATTTAGAGGGACAGCACCCATCAACTTAACCGATAGGCTCATCCAGGTCCTTCGATGGGCAACCGGTTCTGTTGAGATATTCTTCTCAAGGAACAATGCACTTTTTGCTACCCAGAGGATTAAGTTTTTACAAAGGGTGGCGTATTTCAATGTCGGATTGTACCCTTTCACATCTATTTTCCTCATTGTGTACTGCATTATTCCCGCACTTTCTCTGTTCACCGGGAAGTTCATTGTTCAGTCCCTCAGCGTGACTTTTCTAGTGTTCTTGTTAGCCATCACACTCACCCTTTGCATGTTGGCACTCCTCGAGATCAAATGGTCAGGAATTACTCTCCACGACTGGTGGAGAAATGAACAGTTCTGGTTGATTGGCGGAACTAGTGCTCATCCTGCAGCTGTGATTCAAGGGTTATTGAAGGTAATAGCAGGTGTTGACCTCTCATTCACGTTGACATCAAAACCAGGTGCGGCTGAGGAAGGTGACGATGAATTTGCGGAGCTGTACGAGTTCAGGTTCACCATTTTGATGATACCTCCGGTGACAATAATTTTGCTCAACATGGTGGCGATTGCAGTAGGGGTATTTAGGACAATGTACAGCCCATTCCCACAGTGGAGCAAGCTTCTTGGAGGAGTGTTCTTCAGCTTTTGGGTGCTGTCTCATCTGTATCCGTTTGCAAAAGGGTTGATGGGGAGGAGGGGGAAGATTCCGACTATAGTGTATCTGTGGTCTATATTGATCTGCATTGTTGTTTCAATGCTATGCGTTTACATTCACCCGCCTTTGGGTACGCAGGGTTACATGAAGTTCTAG

Network for GWHGAAZE000105

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14570.7	zf-RING_4	147	190	5.50E-09
PF03552.15	Cellulose_synt	394	1161	0

Protein Sequence

>GWHPAAZE000105
MVIMSYDSPSSSPVKITISTSGGSRIGLTSPVPRHSLSNNPNSPLSGRGFGDSGDRRRDSGCGKFVTMSKDSRDEFVAYTVQIPSTPDHQFMSESQSSPKSHENPNDSFIKNTTYTGGFNSVTKTHVRVKSEEEQVELKSKLLCGMEGCDEKLVEGDNQCECGYRICRDCFFDCTENGGGYCPGCKEPYRDAGEEESDVDDDDEPKSEEKDLANSLPRKGRGGGVWLDKKFSLVQSFKAPNQEFDHNRWLFETHGTYGFGNAVWPRDGYEFERGTNNGYENPPNFNQRRNRPLTRKVGISAAIISPYRLLMVLRLAALVCFLTWRISNPNRDALWLWMMSVVCEVWFALSWLLDQLPKLCPVKRVTDLSVLKDRFESSETNPLHPKGLSDLPGIDIFVSTADAEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGSLVTFEALAEAASFAKIWVPFCRKHNIEPRNPEAYFGQKRDPLKNKVRLDFVRERRRVKREYDEFKVRINALPESIRRRSDAFNAQAEIKAKKQQREIGENPFEPIKVPRATYMSDGQQWHGSWSSPEAEHSKGDHAGIIQIMLVPPKPETVFGTDDDDKENLIDAKEVDTRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSSALREGMCFMLDRGGDKICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRIALYGFSPPRATEHHGWFGGRKIKMSLRKPKVPKNHDDDEMILPIIGDRNQGDEFIKALIPERFGDSTHLMDSIAVAEFGGRLIHELRGKDSQGRPAGSLAVQREPLDSTAIAEAIKVITCFYEDKTEWGKRVGWIYGSITEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLIQVLRWATGSVEIFFSRNNALFATQRIKFLQRVAYFNVGLYPFTSIFLIVYCIIPALSLFTGKFIVQSLSVTFLVFLLAITLTLCMLALLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVIQGLLKVIAGVDLSFTLTSKPGAAEEGDDEFAELYEFRFTILMIPPVTIILLNMVAIAVGVFRTMYSPFPQWSKLLGGVFFSFWVLSHLYPFAKGLMGRRGKIPTIVYLWSILICIVVSMLCVYIHPPLGTQGYMKF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00770	E2.4.2.24	Metabolic pathways	map01100
K00770	E2.4.2.24	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0030244	biological_process	cellulose biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016760	molecular_function	cellulose synthase (UDP-forming) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.601
	SRR3591706	second leaf	4.403
	SRR3591707	mature leaf	3.313
	SRR3591708	Shoot apex	32.307
	SRR3591709	Stem	6.068
	SRR3591710	White floral bud	0.920
	SRR3591711	White flower	0.402
	SRR3591712	Green floral bud	1.607
	SRR3591713	Yellow flower	0.060
SRP173429	SRR8316895	Juvenile bud stage	3.736
	SRR8316896	Juvenile bud stage	2.882
	SRR8316897	Juvenile bud stage	1.833
	SRR8316894	Third green stage	1.291
	SRR8316900	Third green stage	1.077
	SRR8316901	Third green stage	0.972
	SRR8316898	Complete white stage	0.049
	SRR8316899	Complete white stage	0.556
	SRR8316903	Complete white stage	0.172
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.026
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.037
	SRR8316907	Gold flowering stage	0.040
	SRR8316908	Gold flowering stage	0.029
SRP132670	SRR6706286	Control	1.196
	SRR6706287	Light intensity 50%	0.884
	SRR6706288	Light intensity 20%	1.485
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.268
	CNS0095593	Slightly white alabastrum(diploid) 2	1.204
	CNS0095594	Slightly white alabastrum(diploid) 3	0.751
	CNS0095595	Whole white alabastrum(diploid) 2	1.645
	CNS0095596	Whole white alabastrum(diploid) 3	0.961
	CNS0095597	Whole white alabastrum(diploid) 4	1.363
	CNS0095598	Silvery flower (diploied) 1	1.506
	CNS0095599	Silvery flower (diploied) 2	1.781
	CNS0095600	Silvery flower (diploied) 3	0.777
	CNS0095601	Golden flower (diploid) 1	1.023
	CNS0095602	Golden flower (diploid) 2	0.990
	CNS0095603	Golden flower (diploid) 3	0.687
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.890
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.668
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.064
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.860
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.722
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.810
	CNS0095610	Silvery flower (tetraploid) 1	0.055
	CNS0095611	Silvery flower (tetraploid) 2	0.343
	CNS0095612	Silvery flower (tetraploid) 3	0.363
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.012
	CNS0095615	Golden flower (tetraploid) 3	0.020
CRA001975	CRR073297	Stem 1	3.793
	CRR073298	Stem 2	4.691
	CRR073299	Stem 3	7.770
	CRR073300	Leaf 1	2.447
	CRR073301	Leaf 2	1.265
	CRR073302	Leaf 3	1.855
	CRR073303	Juvenile bud 1	0.920
	CRR073304	Juvenile bud 2	0.326
	CRR073305	Juvenile bud 3	0.956
	CRR073306	Third green 1	0.301
	CRR073307	Third green 2	0.312
	CRR073308	Third green 3	0.084
	CRR073309	Second white 1	0.023
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.030
	CRR073312	Silver flowering 1	0.027
	CRR073313	Silver flowering 2	0.031
	CRR073314	Silver flowering 3	0.029
	CRR073315	Gold flowering 1	0.264
	CRR073316	Gold flowering 2	0.260
	CRR073317	Gold flowering 3	0.627
	CRR073318	Tawny withering 1	10.053
	CRR073319	Tawny withering 2	5.835
	CRR073320	Tawny withering 3	9.816