Gene detail

Detail information of GWHGAAZE000117

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006480117.1	9.8649E-112	PREDICTED: putative proline-rich receptor-like protein kinase PERK11-like [Citrus sinensis]
Swissprot	tr\|Q9CAL8\|PEK13_ARATH	5E-27	Proline-rich receptor-like protein kinase PERK13
trEMBL	tr\|A0A061DSX6\|A0A061DSX6_THECC	2E-104	Serine-threonine protein kinase, plant-type, putative isoform 2 {ECO:0000313\|EMBL:EOX95151.1} (Fragment)
TAIR10	AT1G21590.1	3E-29	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	2261512	2265389	-
GWHAAZE00000001	mRNA	2261512	2265389	-
GWHAAZE00000001	exon	2261512	2261880	-
GWHAAZE00000001	exon	2261960	2262109	-
GWHAAZE00000001	exon	2262237	2262360	-
GWHAAZE00000001	exon	2262461	2262525	-
GWHAAZE00000001	exon	2262624	2262790	-
GWHAAZE00000001	exon	2262873	2263372	-
GWHAAZE00000001	exon	2263524	2263627	-
GWHAAZE00000001	exon	2265042	2265389	-
GWHAAZE00000001	CDS	2265042	2265389	-
GWHAAZE00000001	CDS	2263524	2263627	-
GWHAAZE00000001	CDS	2262873	2263372	-
GWHAAZE00000001	CDS	2262624	2262790	-
GWHAAZE00000001	CDS	2262461	2262525	-
GWHAAZE00000001	CDS	2262237	2262360	-
GWHAAZE00000001	CDS	2261960	2262109	-
GWHAAZE00000001	CDS	2261755	2261880	-
GWHAAZE00000001	three_prime_UTR	2261512	2261754	-

Transcript Sequence
>GWHTAAZE000117 ATGGTGGTAGAGAATGAGAGAAAGGGAGGGAAATCCGTCGTGGTAGTACTTAATGGAATCAGAGTTTTGACAGAGAAAAACGGGATAGCGCCACTAAAGTGCGCGCTACGCGATGTGGTTGTGGCAAAAGATAAAGTTTTAGTTATTAACATTTTTAATTGGAAAGCGTGCACGCCATCTCCGGCTTCTACAACCTATTGTTGTTTGTTAGAGAATCGGAATAATGATAAAGATGATGGGCGACAAAGAGATTCTTATGTCAAATTCCTCCATGAAGAGATCAATAGGAGAGAAGAGGCTTGTACCAACATATTTGGACCGTTTTTTAAGTACTGTAAATCCACTGGAGTGGAGTTTGTGGTAAAGACTGCCACTGATTTCGAATTTCCAAGTAGTTCCATAATTGAGAAAGAGGCAAAAAAAACAGGAGCGACTTGGATTATCATGGACAGCGATGATGAAGAACATTGTTGTACCTTGCCTAATCTCGAAGGCAATGATCAACCATTCGATCCATCTCTTGTTGCAAGTACAAGCAGACAAGAGGAAATCCTACCCGCAGATGAGTCATTAGAGGAAATTGAGACTACCCCGGATGATAATAACTCTTCAGCAAGAGTCTTTTCCATGGTTGATCGAGCGCTAGGGATGCCCACGCACCTAACATGGGAAGTGATTTCAGAGATAACAGGCGGGTTCAGAGAAATCATTGGTGTTGGTGAAAATGATAATTTTAATATGTACGGCGGATATTTATGCAATAAGCAGTCTCGAATTGTTGTCAAAAGATTCATAGGTGATTTTAGTGCTATTCTTGAAGCCGAAAAGAAGGCAGCTCTTGCTATGTATCACAAAAATATCCTGCGGTTAATTGCATACCACAAGAATGAAAATGCTACTGTTCTTGTTTTTCCCTATACAAAATTAGGGACGTTAGACAAATATCTTCATGGCGAGAGGAGGGAAAACCCACAATTGGCATTTGAGGATAGTATGAAGATAGCTATAGGAATTGCTCAAGGCCTTCAATACATGCACGAAGAGTGTCCTAGAGGTCCAGTTGTACATGGTAACTTGCGGCCGTGCCATATTTTTCTCAGAGACGACTTACAACCGCAGATCACTGGATTTGGCAAAGCAACATGGCTCCAGCTAGAACAATCAACTCCAATCTCCAGTCACAGGGATCATTCAGACCCTGCATCACTTACTTTACTAAGAAAAGACATTCGCGACTTTGGAATTTTGCTCCTGAGGCTATTCTGCAGAAATTCTGCCTCGCTGGGTAACACAGAGTTAGTGCAATGGGCTGGGCCATTGTTGCAACAAAGAGTGTACCCCCAGTTGTTTGATGGAGAAATATTGGAGCACCTAGATCCTTATGAAATCTTTAGGGTGACTTGTGCGGCAGCCCAATGCATAAAGACTAGGCAAACTTCAAGATCCTACATGAGCACGGTAGTTTCTTGGCTAAAAGGTGAAATTTCTTGTGCTGTGGAATCGTCTCCGTCATCAGAGGGCAGTCCAAATTTGGACTTGAACATGTATATGCCTCAATCAGTGGATTTAAGCCGGCGCTACTAAACCCTGAAGAATGATATGATTAAATCCCCCTTTGCCCCCACCCACAACAAAATATTTGCCAATAAATATAGTGTCTACAGAGTAAATAAAAGAAGAAGAAAATGAAGAGCAATGTATTGTTTCTCTTGATTGCGACTCGCAAAGGATAGAATGATTCATAAACAATTGTATACACAAGGCTTCTACTTGATTCTCTTTCTTGAGATAAGTTAATTATAAGATCGGATTTATAGTTTATTCATA

Network for GWHGAAZE000117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	274	383	2.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_WAK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004713	molecular_function	protein tyrosine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.129
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.101
	SRR3591711	White flower	0.246
	SRR3591712	Green floral bud	0.050
	SRR3591713	Yellow flower	2.353
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.151
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.098
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	1.152
	SRR8316904	Silver flowering stage	0.923
	SRR8316905	Silver flowering stage	0.330
	SRR8316906	Gold flowering stage	2.675
	SRR8316907	Gold flowering stage	2.438
	SRR8316908	Gold flowering stage	1.378
SRP132670	SRR6706286	Control	0.042
	SRR6706287	Light intensity 50%	0.024
	SRR6706288	Light intensity 20%	0.012
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.051
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.071
	CNS0095595	Whole white alabastrum(diploid) 2	0.002
	CNS0095596	Whole white alabastrum(diploid) 3	0.001
	CNS0095597	Whole white alabastrum(diploid) 4	0.021
	CNS0095598	Silvery flower (diploied) 1	0.094
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.740
	CNS0095601	Golden flower (diploid) 1	0.723
	CNS0095602	Golden flower (diploid) 2	0.625
	CNS0095603	Golden flower (diploid) 3	0.392
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.114
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.001
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.140
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.286
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.106
	CNS0095610	Silvery flower (tetraploid) 1	0.616
	CNS0095611	Silvery flower (tetraploid) 2	0.849
	CNS0095612	Silvery flower (tetraploid) 3	20.361
	CNS0095613	Golden flower (tetraploid) 1	0.860
	CNS0095614	Golden flower (tetraploid) 2	1.467
	CNS0095615	Golden flower (tetraploid) 3	1.932
CRA001975	CRR073297	Stem 1	0.132
	CRR073298	Stem 2	0.043
	CRR073299	Stem 3	0.115
	CRR073300	Leaf 1	0.005
	CRR073301	Leaf 2	0.131
	CRR073302	Leaf 3	0.023
	CRR073303	Juvenile bud 1	0.024
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.036
	CRR073306	Third green 1	28.561
	CRR073307	Third green 2	13.214
	CRR073308	Third green 3	16.424
	CRR073309	Second white 1	9.719
	CRR073310	Second white 2	17.337
	CRR073311	Second white 3	8.221
	CRR073312	Silver flowering 1	2.527
	CRR073313	Silver flowering 2	2.126
	CRR073314	Silver flowering 3	1.979
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.002
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.546
	CRR073319	Tawny withering 2	0.329
	CRR073320	Tawny withering 3	0.304