Gene detail

Detail information of GWHGAAZE000118

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009771846.1	2.9215E-143	PREDICTED: exopolygalacturonase clone GBGE184 [Nicotiana sylvestris]
COG	YP_003391696.1	1E-27	glycoside hydrolase family 28
Swissprot	tr\|Q39786\|PGLR_GOSHI	5E-92	Polygalacturonase (Precursor)
trEMBL	tr\|Q9FV64\|Q9FV64_TOBAC	1E-143	NTS1 protein {ECO:0000313\|EMBL:AAG14416.1}
TAIR10	AT1G02790.1	3E-67	polygalacturonase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	2267521	2269008	+
GWHAAZE00000001	mRNA	2267521	2269008	+
GWHAAZE00000001	exon	2267521	2267553	+
GWHAAZE00000001	exon	2267629	2267952	+
GWHAAZE00000001	exon	2268087	2268599	+
GWHAAZE00000001	exon	2268736	2269008	+
GWHAAZE00000001	CDS	2267521	2267553	+
GWHAAZE00000001	CDS	2267629	2267952	+
GWHAAZE00000001	CDS	2268087	2268599	+
GWHAAZE00000001	CDS	2268736	2269008	+

Transcript Sequence
>GWHTAAZE000118 GCTAAGCCCGATGGTACAACCGATAACGCTCTGTCGCTAATACAAGCATGGAATGCGGCATGCAAATCAACCGGTGCTACGCCACCCAAGCTTCTGATTCCTCCGGGGAACTTTTCGGCAGGGGAGGTTGTGTTTGTAGGGCCATGCACTGCCCCTAAGCCTATAACCATTGAGGTCCAAGGGACCCTACTGAGTGATACAGACTTGAGTCTATACACTCAAAATACATGGATATCCTTTGAGCACATCGACGGGTTGGAATTGAAAGGTTCAGGCACTTTTAATGGCCAAGGCGAGGCTTCATGGAAAAACGCTGGTGACGGTGGGAGTCACAGTGATGGCGGTCATCTCCCCGATTCAATTGTATTTAATGGAGTGTGCAATGCTATTGTGAGGGACGTGAAATTGGTAAATAGCAAAGGTTTCCACATGAAGATAACTGCCAACAGCCAAAACTTCACAGTTGACAATGTTACCATAACAGCACCTGGAGATAGCCCCAACACTGATGGGATCCATATTAGCAAATCTACTAAAGTCAACATAACTAACAGTGTGATCGGGACTGGTGACGATTGCGTCTCCATTGGCGATGGAAACACCGACATTTTCGTCTCCAAAATTACTTGTGGACCCGGCCACGGCATCAGCATTGGAAGCCTTGGAAAGCGTGAAACCGAGACAGACTTGAAGAATATTATCATCACAAATTGTACATTGACGAATACTACAAACGGGGCAAGGATCAAGTCGTACCGGGAATCACCCAAGCTCTTAGCCACCGGCATTACTTTCGAAGACATAACAATGAATGGCGTTCAAAATCCCATCATCATTGATCAGAATTACAACTCGGCAAACAAGGCAGGGGGATCAAACGTGAAGGTTAACGATGTTCACTTTAGGAACATAAGGGGTACCACTGTTTCAAGTGTTGGGGTGGCTCTGAATTGCAGCGACGTATGCCCTTGTGAAGGAATTGAATTGGTTGATATCGATTTGTGCTTTACCGGAGATAAAGTTAGGTTTCCGACGTTCACATCTGCATGTGTCAATGCTAAAACAGTCCATAATGGGAAAATGAACCCTCCGGCTTGTGCATAAATATATATATATATATATATTCATCCATATATAATCTAA

Network for GWHGAAZE000118

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	27	345	2.70E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01213	E3.2.1.67	Metabolic pathways	map01100
K01213	E3.2.1.67	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.802
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.235
	SRR3591708	Shoot apex	1.837
	SRR3591709	Stem	7.839
	SRR3591710	White floral bud	1105.804
	SRR3591711	White flower	52.043
	SRR3591712	Green floral bud	1214.515
	SRR3591713	Yellow flower	31.549
SRP173429	SRR8316895	Juvenile bud stage	250.334
	SRR8316896	Juvenile bud stage	737.437
	SRR8316897	Juvenile bud stage	257.938
	SRR8316894	Third green stage	214.512
	SRR8316900	Third green stage	813.877
	SRR8316901	Third green stage	888.211
	SRR8316898	Complete white stage	0.883
	SRR8316899	Complete white stage	6.624
	SRR8316903	Complete white stage	1.551
	SRR8316902	Silver flowering stage	13.055
	SRR8316904	Silver flowering stage	26.136
	SRR8316905	Silver flowering stage	7.260
	SRR8316906	Gold flowering stage	3.587
	SRR8316907	Gold flowering stage	1.792
	SRR8316908	Gold flowering stage	1.357
SRP132670	SRR6706286	Control	468.368
	SRR6706287	Light intensity 50%	441.704
	SRR6706288	Light intensity 20%	367.955
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1201.036
	CNS0095593	Slightly white alabastrum(diploid) 2	907.444
	CNS0095594	Slightly white alabastrum(diploid) 3	1562.583
	CNS0095595	Whole white alabastrum(diploid) 2	1964.087
	CNS0095596	Whole white alabastrum(diploid) 3	2319.639
	CNS0095597	Whole white alabastrum(diploid) 4	2587.626
	CNS0095598	Silvery flower (diploied) 1	55.773
	CNS0095599	Silvery flower (diploied) 2	187.050
	CNS0095600	Silvery flower (diploied) 3	37.642
	CNS0095601	Golden flower (diploid) 1	60.738
	CNS0095602	Golden flower (diploid) 2	28.779
	CNS0095603	Golden flower (diploid) 3	26.822
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1989.110
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2406.014
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.730
	CNS0095607	Whole white alabastrum(tetraploid) 1	3170.243
	CNS0095608	Whole white alabastrum(tetraploid) 2	3308.767
	CNS0095609	Whole white alabastrum(tetraploid) 3	1521.620
	CNS0095610	Silvery flower (tetraploid) 1	26.508
	CNS0095611	Silvery flower (tetraploid) 2	113.472
	CNS0095612	Silvery flower (tetraploid) 3	307.073
	CNS0095613	Golden flower (tetraploid) 1	51.188
	CNS0095614	Golden flower (tetraploid) 2	11.481
	CNS0095615	Golden flower (tetraploid) 3	134.538
CRA001975	CRR073297	Stem 1	394.509
	CRR073298	Stem 2	386.602
	CRR073299	Stem 3	227.692
	CRR073300	Leaf 1	926.473
	CRR073301	Leaf 2	684.420
	CRR073302	Leaf 3	376.050
	CRR073303	Juvenile bud 1	608.796
	CRR073304	Juvenile bud 2	375.813
	CRR073305	Juvenile bud 3	46.172
	CRR073306	Third green 1	261.923
	CRR073307	Third green 2	374.506
	CRR073308	Third green 3	307.369
	CRR073309	Second white 1	14.696
	CRR073310	Second white 2	54.928
	CRR073311	Second white 3	63.352
	CRR073312	Silver flowering 1	268.153
	CRR073313	Silver flowering 2	253.305
	CRR073314	Silver flowering 3	163.089
	CRR073315	Gold flowering 1	312.333
	CRR073316	Gold flowering 2	87.044
	CRR073317	Gold flowering 3	97.771
	CRR073318	Tawny withering 1	302.508
	CRR073319	Tawny withering 2	270.795
	CRR073320	Tawny withering 3	254.576