Gene detail

Detail information of GWHGAAZE000121

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011079963.1	0	PREDICTED: probable pectinesterase/pectinesterase inhibitor 7 [Sesamum indicum]
COG	YP_005010945.1	1E-53	pectinesterase
Swissprot	tr\|Q8RXK7\|PME41_ARATH	0	Pectinesterase 41 (Precursor)
trEMBL	tr\|B9I9P7\|B9I9P7_POPTR	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT4G02330.1	5E-148	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	2299613	2301047	+
GWHAAZE00000001	mRNA	2299613	2301047	+
GWHAAZE00000001	exon	2299613	2299952	+
GWHAAZE00000001	exon	2300359	2301047	+
GWHAAZE00000001	CDS	2299613	2299952	+
GWHAAZE00000001	CDS	2300359	2301047	+

Transcript Sequence
>GWHTAAZE000121 ATGACAAGGCGGAATTTAGAAATTTTAGAGACGGTTAACAAACGAAGGCTTCTTCAGTCGAACAACCAAGTTTTGGTTAACGACGTGGTGACTGTGAGCCAGGACGGGACTGGAAACTTCACCACCATCACCGACGCGGTGGCGGCTGCCCCGAATAAAACACGGGCCGAGAACGGGTATTTTTTGATATATGTCACCGCGGGTGTTTACAAGGAATATGTGTTGGTTGATAAGAACAAGAGGTACGTTATGATGATTGGGGATGGGATTAATCAAACGGTGATTACTGGCAATCGTAGCGTTGTTGATGGATGGACCACCTTCAATTCTTTCTCATTTGCTGTTGTGGGACAAGGATTCGTGGGGGTAAATTTGACATTTCGTAACACGGCAGGGGCAGTCAAGCACCAAGCAGTTGCAGTACGAAACGGGGCTGATTTATCTGCATTCTATAGTTGCAGCTTCGAAGGCTATCAAGACACATTATACGTACACTCCCTCCGCCAATTCTACAGAGATTGCGATATATACGGCACAGTCGACTTCATTTTTGGCAACGCTGCGGTTGTTTTCCAGAATTGTAACATATATCCTCGGCAGCCCTTAAACAACCAATTTAATGCCATCACTGCCCAAGGTAGGACCGACCCGGGTCAAAACACAGGCATTTCTATGCAAAATTGTACCATTAGAGCGGCCGATGATTTGGCCACCAGTAATGGAACTACCCAGACTTACTTGGGTAGACCGTGGAAGGAGTATTCGAGGACGGTCTATTTGCAATCTTTTATGGATGGTTTGATTCACCCGATGGGGTGGCGTGAATGGTCGGGTGATTTTGCTCTAAATACGTCGTATTATGCTGAGTTCAACAATAGGGGGAGTGGTTCAGATACTAGTGGGAGAGTTACATGGCCCGGTTTTTACAGGATTAATGCGACAGATGCAGCTAATTTTGTCGTATCGACGTTTTTATTGGGCGATGATTGGTTACCTCAGACTGGATTGCCATACTATGGTGGTTTATAA

Network for GWHGAAZE000121

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	30	328	8.40E-134

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.889
	SRR3591706	second leaf	0.732
	SRR3591707	mature leaf	5.830
	SRR3591708	Shoot apex	2.527
	SRR3591709	Stem	17.736
	SRR3591710	White floral bud	0.529
	SRR3591711	White flower	1.132
	SRR3591712	Green floral bud	1.761
	SRR3591713	Yellow flower	0.634
SRP173429	SRR8316895	Juvenile bud stage	5.680
	SRR8316896	Juvenile bud stage	6.843
	SRR8316897	Juvenile bud stage	1.762
	SRR8316894	Third green stage	2.990
	SRR8316900	Third green stage	0.976
	SRR8316901	Third green stage	0.902
	SRR8316898	Complete white stage	0.084
	SRR8316899	Complete white stage	0.918
	SRR8316903	Complete white stage	0.363
	SRR8316902	Silver flowering stage	0.205
	SRR8316904	Silver flowering stage	0.395
	SRR8316905	Silver flowering stage	0.166
	SRR8316906	Gold flowering stage	1.453
	SRR8316907	Gold flowering stage	5.869
	SRR8316908	Gold flowering stage	6.561
SRP132670	SRR6706286	Control	1.195
	SRR6706287	Light intensity 50%	2.542
	SRR6706288	Light intensity 20%	1.241
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.827
	CNS0095593	Slightly white alabastrum(diploid) 2	3.911
	CNS0095594	Slightly white alabastrum(diploid) 3	4.631
	CNS0095595	Whole white alabastrum(diploid) 2	2.309
	CNS0095596	Whole white alabastrum(diploid) 3	1.310
	CNS0095597	Whole white alabastrum(diploid) 4	0.318
	CNS0095598	Silvery flower (diploied) 1	6.671
	CNS0095599	Silvery flower (diploied) 2	5.323
	CNS0095600	Silvery flower (diploied) 3	2.054
	CNS0095601	Golden flower (diploid) 1	7.079
	CNS0095602	Golden flower (diploid) 2	3.193
	CNS0095603	Golden flower (diploid) 3	3.476
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.361
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.485
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.505
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.326
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.575
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.734
	CNS0095610	Silvery flower (tetraploid) 1	0.116
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.374
	CNS0095613	Golden flower (tetraploid) 1	0.939
	CNS0095614	Golden flower (tetraploid) 2	1.439
	CNS0095615	Golden flower (tetraploid) 3	0.434
CRA001975	CRR073297	Stem 1	3.611
	CRR073298	Stem 2	1.390
	CRR073299	Stem 3	3.402
	CRR073300	Leaf 1	0.736
	CRR073301	Leaf 2	2.142
	CRR073302	Leaf 3	2.627
	CRR073303	Juvenile bud 1	0.669
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.699
	CRR073306	Third green 1	0.078
	CRR073307	Third green 2	0.143
	CRR073308	Third green 3	0.351
	CRR073309	Second white 1	0.175
	CRR073310	Second white 2	0.100
	CRR073311	Second white 3	0.539
	CRR073312	Silver flowering 1	0.940
	CRR073313	Silver flowering 2	1.224
	CRR073314	Silver flowering 3	0.726
	CRR073315	Gold flowering 1	5.961
	CRR073316	Gold flowering 2	17.621
	CRR073317	Gold flowering 3	9.607
	CRR073318	Tawny withering 1	17.779
	CRR073319	Tawny withering 2	12.493
	CRR073320	Tawny withering 3	18.380