Detail information of GWHGAAZE000142


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265436.10PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Vitis vinifera]
Swissprottr|B8B5U8|BAHL2_ORYSI2E-158Probable E3 ubiquitin-protein ligase BAH1-like 1
trEMBLtr|D7U277|D7U277_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI36843.3}
TAIR10AT1G02860.12E-126SPX (SYG1/Pho81/XPR1) domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene26618072664322+
GWHAAZE00000001mRNA26618072664322+
GWHAAZE00000001exon26618072661978+
GWHAAZE00000001exon26624982662742+
GWHAAZE00000001exon26628672663121+
GWHAAZE00000001exon26636132663750+
GWHAAZE00000001exon26638352663893+
GWHAAZE00000001exon26639812664322+
GWHAAZE00000001CDS26618072661978+
GWHAAZE00000001CDS26624982662742+
GWHAAZE00000001CDS26628672663121+
GWHAAZE00000001CDS26636132663750+
GWHAAZE00000001CDS26638352663893+
GWHAAZE00000001CDS26639812664086+
GWHAAZE00000001three_prime_UTR26640872664322+
Transcript Sequence

Network for GWHGAAZE000142

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_32172701.20E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.058
SRR3591706second leaf15.092
SRR3591707mature leaf17.617
SRR3591708Shoot apex10.632
SRR3591709Stem41.434
SRR3591710White floral bud69.700
SRR3591711White flower38.379
SRR3591712Green floral bud31.031
SRR3591713Yellow flower46.555
SRP173429 SRR8316895Juvenile bud stage 9.569
SRR8316896Juvenile bud stage 13.821
SRR8316897Juvenile bud stage 5.034
SRR8316894Third green stage 7.446
SRR8316900Third green stage 28.404
SRR8316901Third green stage 30.232
SRR8316898Complete white stage 56.791
SRR8316899Complete white stage 94.908
SRR8316903Complete white stage 105.632
SRR8316902Silver flowering stage37.889
SRR8316904Silver flowering stage47.730
SRR8316905Silver flowering stage18.948
SRR8316906Gold flowering stage 43.629
SRR8316907Gold flowering stage 45.990
SRR8316908Gold flowering stage 38.487
SRP132670SRR6706286Control21.724
SRR6706287Light intensity 50%24.064
SRR6706288Light intensity 20%26.020
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.058
CNS0095593Slightly white alabastrum(diploid) 222.131
CNS0095594Slightly white alabastrum(diploid) 313.031
CNS0095595Whole white alabastrum(diploid) 217.056
CNS0095596Whole white alabastrum(diploid) 319.383
CNS0095597Whole white alabastrum(diploid) 416.960
CNS0095598Silvery flower (diploied) 126.821
CNS0095599Silvery flower (diploied) 230.450
CNS0095600Silvery flower (diploied) 372.742
CNS0095601Golden flower (diploid) 142.786
CNS0095602Golden flower (diploid) 281.665
CNS0095603Golden flower (diploid) 367.032
CNS0095604Slightly white alabastrum(tetraploid) 114.347
CNS0095605Slightly white alabastrum(tetraploid) 27.887
CNS0095606Slightly white alabastrum(tetraploid) 324.563
CNS0095607Whole white alabastrum(tetraploid) 16.511
CNS0095608Whole white alabastrum(tetraploid) 27.654
CNS0095609Whole white alabastrum(tetraploid) 314.931
CNS0095610Silvery flower (tetraploid) 150.179
CNS0095611Silvery flower (tetraploid) 243.589
CNS0095612Silvery flower (tetraploid) 336.352
CNS0095613Golden flower (tetraploid) 172.541
CNS0095614Golden flower (tetraploid) 257.921
CNS0095615Golden flower (tetraploid) 3188.948
CRA001975CRR073297Stem 114.845
CRR073298Stem 214.056
CRR073299Stem 313.101
CRR073300Leaf 142.562
CRR073301Leaf 232.536
CRR073302Leaf 334.581
CRR073303Juvenile bud 134.899
CRR073304Juvenile bud 249.101
CRR073305Juvenile bud 358.303
CRR073306Third green 111.306
CRR073307Third green 214.894
CRR073308Third green 316.684
CRR073309Second white 19.454
CRR073310Second white 29.060
CRR073311Second white 310.775
CRR073312Silver flowering 111.707
CRR073313Silver flowering 215.316
CRR073314Silver flowering 316.601
CRR073315Gold flowering 127.389
CRR073316Gold flowering 232.803
CRR073317Gold flowering 327.860
CRR073318Tawny withering 118.729
CRR073319Tawny withering 211.438
CRR073320Tawny withering 323.687