Gene detail

Detail information of GWHGAAZE000161

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006386748.1	4.68317E-49	hypothetical protein POPTR_0002s20830g [Populus trichocarpa]
Swissprot	tr\|Q94BT9\|ATOX1_ARATH	3E-10	Copper transport protein ATX1
trEMBL	tr\|U5GM10\|U5GM10_POPTR	2E-49	Uncharacterized protein {ECO:0000313\|EMBL:ERP64545.1}
TAIR10	AT5G27690.1	1E-22	Heavy metal transport/detoxification superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	3313939	3315478	-
GWHAAZE00000001	mRNA	3313939	3315478	-
GWHAAZE00000001	exon	3315425	3315478	-
GWHAAZE00000001	exon	3315164	3315239	-
GWHAAZE00000001	exon	3313939	3314597	-
GWHAAZE00000001	CDS	3315425	3315478	-
GWHAAZE00000001	CDS	3315164	3315239	-
GWHAAZE00000001	CDS	3313939	3314597	-

Transcript Sequence
>GWHTAAZE000161 ATGGCAAAAACACCAGCTGATGACTTGTCCTCAGAACAACCCCTTACATACCAGACTCATGCCTTGAAAGTTTATATCCATTGTGAGGGCTGCAAGAAGAAAGTCAAGAAAGTTCTTCACAGCATCGATGGTGTTTATAAGACTAATATAGATTCTCAGCAGCAGAAAGTTACAGTTACCGGAAACGTGGACGCCAACACATTGATCAAGAAGCTGCTGAGATCAGGTAAATGCGTTGAGCTCTGGCCCGAAAGCACAGGTGGAAATGACAAAAATCCCGGGAAATCAAAGAACAAGAAAAAACAAAAAAAACCCAACGATGGTGGAAATAATGAAGAACAGATCAAGAGTGAGGCAGAAACAAATGAAAAATCTGCCCAAGATTCTGGCAATGCAAAACAGAGCCAAATTGGGATGCCGGAGAAATCTGATCTGGACGGCAATCAGACGCCAGTGGAGGGTGGTGACAGTGAGGAAAGTGCAGCTCCAGCAGCTGGTGGTGGCGATGGATCAGGTAAGAAGAAGAAGAAGAAAAAGAAGGGGCAAAATAGTGGTACAATGTCAAATGGTGAAAGTGGAAACAGTGCCAACGCACCTGCGGGTACTGGAACTCCACCCACTGGAGCCGTGGATCCGCAGGTGTGGCCGATTAATCTCGGCCCTCCACCTCAGCAAGTGTATCAGTATCCAGTACTCCCCGCATATGGGTTGAGTTACAATACGGTGTATCCTACCACCAGCTCTTCATATTATGCGCCACCAGCTTATGCCTATGGTCACTCTCATCCG

Network for GWHGAAZE000161

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0002

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00403.27	HMA	26	73	2.50E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030001	biological_process	metal ion transport
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.431
	SRR3591706	second leaf	13.420
	SRR3591707	mature leaf	4.125
	SRR3591708	Shoot apex	57.153
	SRR3591709	Stem	95.307
	SRR3591710	White floral bud	17.833
	SRR3591711	White flower	13.395
	SRR3591712	Green floral bud	20.913
	SRR3591713	Yellow flower	3.463
SRP173429	SRR8316895	Juvenile bud stage	17.697
	SRR8316896	Juvenile bud stage	20.547
	SRR8316897	Juvenile bud stage	9.941
	SRR8316894	Third green stage	7.672
	SRR8316900	Third green stage	26.069
	SRR8316901	Third green stage	28.635
	SRR8316898	Complete white stage	3.251
	SRR8316899	Complete white stage	39.099
	SRR8316903	Complete white stage	7.145
	SRR8316902	Silver flowering stage	0.616
	SRR8316904	Silver flowering stage	0.385
	SRR8316905	Silver flowering stage	0.227
	SRR8316906	Gold flowering stage	0.992
	SRR8316907	Gold flowering stage	1.857
	SRR8316908	Gold flowering stage	2.309
SRP132670	SRR6706286	Control	35.154
	SRR6706287	Light intensity 50%	25.509
	SRR6706288	Light intensity 20%	21.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.838
	CNS0095593	Slightly white alabastrum(diploid) 2	34.924
	CNS0095594	Slightly white alabastrum(diploid) 3	32.788
	CNS0095595	Whole white alabastrum(diploid) 2	23.428
	CNS0095596	Whole white alabastrum(diploid) 3	13.007
	CNS0095597	Whole white alabastrum(diploid) 4	12.465
	CNS0095598	Silvery flower (diploied) 1	30.775
	CNS0095599	Silvery flower (diploied) 2	25.702
	CNS0095600	Silvery flower (diploied) 3	8.599
	CNS0095601	Golden flower (diploid) 1	35.896
	CNS0095602	Golden flower (diploid) 2	18.417
	CNS0095603	Golden flower (diploid) 3	21.167
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.431
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.423
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.804
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.659
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.772
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.613
	CNS0095610	Silvery flower (tetraploid) 1	6.287
	CNS0095611	Silvery flower (tetraploid) 2	17.192
	CNS0095612	Silvery flower (tetraploid) 3	2.484
	CNS0095613	Golden flower (tetraploid) 1	3.222
	CNS0095614	Golden flower (tetraploid) 2	7.480
	CNS0095615	Golden flower (tetraploid) 3	2.419
CRA001975	CRR073297	Stem 1	23.902
	CRR073298	Stem 2	27.703
	CRR073299	Stem 3	31.877
	CRR073300	Leaf 1	26.216
	CRR073301	Leaf 2	21.067
	CRR073302	Leaf 3	26.607
	CRR073303	Juvenile bud 1	17.907
	CRR073304	Juvenile bud 2	5.528
	CRR073305	Juvenile bud 3	28.033
	CRR073306	Third green 1	0.053
	CRR073307	Third green 2	0.536
	CRR073308	Third green 3	0.110
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.146
	CRR073311	Second white 3	0.671
	CRR073312	Silver flowering 1	0.118
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.089
	CRR073316	Gold flowering 2	3.757
	CRR073317	Gold flowering 3	2.850
	CRR073318	Tawny withering 1	70.255
	CRR073319	Tawny withering 2	23.948
	CRR073320	Tawny withering 3	95.265