Gene detail

Detail information of GWHGAAZE000169

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007200312.1	0	hypothetical protein PRUPE_ppa001648mg [Prunus persica]
COG	YP_845928.1	2E-94	K+ potassium transporter
Swissprot	tr\|Q9M7K4\|POT5_ARATH	0	Potassium transporter 5
trEMBL	tr\|M5VL01\|M5VL01_PRUPE	0	Potassium transporter {ECO:0000256\|RuleBase:RU321113}
TAIR10	AT4G13420.1	0	high affinity K+ transporter 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	3462982	3473751	+
GWHAAZE00000001	mRNA	3462982	3473751	+
GWHAAZE00000001	exon	3462982	3463158	+
GWHAAZE00000001	exon	3463419	3463650	+
GWHAAZE00000001	exon	3469198	3469446	+
GWHAAZE00000001	exon	3470018	3470068	+
GWHAAZE00000001	exon	3471468	3471728	+
GWHAAZE00000001	exon	3471809	3471976	+
GWHAAZE00000001	exon	3472111	3472365	+
GWHAAZE00000001	exon	3472934	3473751	+
GWHAAZE00000001	CDS	3462982	3463158	+
GWHAAZE00000001	CDS	3463419	3463650	+
GWHAAZE00000001	CDS	3469198	3469446	+
GWHAAZE00000001	CDS	3470018	3470068	+
GWHAAZE00000001	CDS	3471468	3471728	+
GWHAAZE00000001	CDS	3471809	3471976	+
GWHAAZE00000001	CDS	3472111	3472365	+
GWHAAZE00000001	CDS	3472934	3473751	+

Transcript Sequence
>GWHTAAZE000169 ATGGCAAGTGAAGATAGTGTCGTGTTGGATGACAAGGAAGAAGTTAACGCAGATCATGAGGAAAAGGAGAAAATACAACTCCAAGGGAAGAAACTCCCTTTCCAAAAGCTGAGGAGATACGACTCTTTGGACATTGAATCTGCCAAGCTTAATGGTCATCCACCCCATGGCTCCAAGGGTACGGGTGCGGATTGGTCAGTGATATTGCAGTTAGCATTTCAAACCTTGGGGGTAGTGTATGGAGATATAGGTACATCCCCACTCTACGTTTATGCAACCACTTTCACTGATGGCATCAAACACGAAGACGATATTTTGGGTGTTCTCTCTCTCATCTTTTATACTATTACCATCATCCCTCTCCTCAAATACATCTTCATCGTTTTACGTGCTAACGACAATGGCGATGGGGGAACGTTTGCATTGTATTCTCTTATATGCCGTTATGCAAAAGTGAGTTTGATACCGAGTCAGCAAGTAGAGGATCGAGATGTGTCAACTTTCCAAATAGAGTTGCCTAGTAAAAACTTGAAAAGGGCATCAAGGCTCCAGTCAAAGCTAGAAAATAGCCGCTATTCAAAGTACTTTTTGTTGTTTGCCACCATGCTTGGCACTTCCATGGTCATAGGAGACGGGGTTCTCACCCCTTGCATCTCAGTTTTATCCGCTGTGGGAGGGATAAAGGAAGCTACTTCCGTCATGACTGAAGATAGAATAGTTTGGGTATCAGTAGCCATCTTAGTGTGCCTATTCATGGTCCAAAGATTTGGGACAGATAAAGTTGGCTACACTTTTGCTCCAATTATTTGTGTTTGGTTCTTACTCATTGCTGGCATTGGGGTCTACAACTTCATCAAATTTGATCCAACTGTTGTTAAAGCAATAAATCCACAGTACATAGTAGATTATTTCACGAGGAACAAAAAAGATGCATGGGTTTCTCTAGGCGGCATCGTTCTTGCAATAACAGGGACGGAGGCATTATTTGCGGATGTTGGTCACTTCAATGTTCGGTCAATACAAATAAGCATGTGTTGTATAACATACCCAGCATTGATATTGGCATACATTGGACAAGCCTCTTTCTTGCGCAAGCACAGGGATGATGTTTTAGATACCTTCTTCAAGTCCATACCAAAGCCAATATATTGGCCAATGTTTGTGGTAGCTATAGCAGCGGCGATTATAGCAAGTCAAGCGATGATATCGGGAACTTTCTCAACTATCCAACAATCATTGTCCTTGGGTTGCTTCCCTCGTGTCAAAATTATACATACTTCGGCCAAGTATGAAGGACAAGTTTTCATACCTGAAATCAATTATCTTCTTATGATCACTTGTGCTGCTGTCACCCTCGGATTTAGGACAACTGCTAAAATAGGCAATGCTTATGTTGAACTCATGTACTTAAGTTCGGTCCTCTACAAGTTCAACCAAGGAGGTTACTTACCCTTAGCTTTTGCTATGGTCCTAACCTCAATCATGTACATTTGGAACGACGTTTACCGACGAAAATACCACTACGAGCTCAACCACAAAGTTTCCCCCCAAAAGGTAAAGGAAATAGCCTTCCAAACAAACTTGTGTCGACTTCCAGGCCTTGCCATTTTTTATTCGGAGCTTGTTCATGGGATTCCCCCAGTTTTTGAACATTATGTGGCTAATATACCTGCATTGCACTCTGTACTCGTTTTTGTGTCAATTAAGGCTTTACCGATAGGGAAGGTTCCGGTTGAGGAGCGGTTTTTGTTCCGTAGGGTCCATCCACGTGAGCTAAACGTGTTCCAGTGTGTGGTGAGGTACGGGTACACGGACGTCAGGAACAAGCAAGAACCATTCGAGATGATTTTGGTTGAGAGGTTGAAGGGGTTCATTAAAGAGGATTTTCATTTCAAGGCCAATTTGCGCGCTAATCGAGAAGGTACAGAATTGGGTGATGGTGAAAATGGGAATGGAAATGTGGATGAGATAATAGAAGGAGAGGAAATGGAGGAGAGAGAGATTGAAGTGTTGGATAAAGCATGGAGGGCAAGGGTGGTACATTTGGTGGGGGAGCATGAGGTGGTGGCGTGTAAAGATGCTGGAATTGGGAAGAGAATAATGATAGATTATGCATACAATTTCTTGAATAGGAATTTGAGGCAAACTGATAAGGTGTTTGATATTCCTCACAAGAGAATGCTTAAAGTGGGAATGACATATGAACTTTAG

Network for GWHGAAZE000169

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0095

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02705.17	K_trans	72	464	2.20E-147
PF02705.17	K_trans	465	605	8.50E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0071805	biological_process	potassium ion transmembrane transport
GO:0016020	cellular_component	membrane
GO:0015079	molecular_function	potassium ion transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.175
	SRR3591706	second leaf	0.086
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.041
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	9.759
	SRR3591711	White flower	4.991
	SRR3591712	Green floral bud	0.976
	SRR3591713	Yellow flower	0.263
SRP173429	SRR8316895	Juvenile bud stage	3.373
	SRR8316896	Juvenile bud stage	0.171
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	1.366
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.031
	SRR8316898	Complete white stage	0.233
	SRR8316899	Complete white stage	8.838
	SRR8316903	Complete white stage	2.636
	SRR8316902	Silver flowering stage	0.055
	SRR8316904	Silver flowering stage	0.009
	SRR8316905	Silver flowering stage	0.005
	SRR8316906	Gold flowering stage	0.016
	SRR8316907	Gold flowering stage	0.053
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.133
	SRR6706287	Light intensity 50%	0.285
	SRR6706288	Light intensity 20%	0.278
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.980
	CNS0095593	Slightly white alabastrum(diploid) 2	2.003
	CNS0095594	Slightly white alabastrum(diploid) 3	1.866
	CNS0095595	Whole white alabastrum(diploid) 2	3.223
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.965
	CNS0095598	Silvery flower (diploied) 1	2.015
	CNS0095599	Silvery flower (diploied) 2	1.295
	CNS0095600	Silvery flower (diploied) 3	3.495
	CNS0095601	Golden flower (diploid) 1	3.220
	CNS0095602	Golden flower (diploid) 2	5.690
	CNS0095603	Golden flower (diploid) 3	5.737
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.273
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.123
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.836
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.820
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.003
	CNS0095611	Silvery flower (tetraploid) 2	0.612
	CNS0095612	Silvery flower (tetraploid) 3	0.139
	CNS0095613	Golden flower (tetraploid) 1	0.025
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.023
CRA001975	CRR073297	Stem 1	0.021
	CRR073298	Stem 2	0.094
	CRR073299	Stem 3	0.087
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.025
	CRR073304	Juvenile bud 2	0.013
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.328
	CRR073307	Third green 2	0.561
	CRR073308	Third green 3	0.478
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.008
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.004
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.003
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.008
	CRR073320	Tawny withering 3	0.000