Gene detail

Detail information of GWHGAAZE000173

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011010712.1	0	PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
Swissprot	tr\|Q9SCQ6\|IDD2_ARATH	3E-109	Protein indeterminate-domain 2 {ECO:0000303\|PubMed:16784536}
trEMBL	tr\|A0A061DSA6\|A0A061DSA6_THECC	0	Indeterminate(ID)-domain 2 {ECO:0000313\|EMBL:EOX94991.1}
TAIR10	AT1G03840.1	5E-82	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	3541337	3544455	+
GWHAAZE00000001	mRNA	3541337	3544455	+
GWHAAZE00000001	exon	3541337	3541523	+
GWHAAZE00000001	exon	3542162	3542558	+
GWHAAZE00000001	exon	3543435	3544455	+
GWHAAZE00000001	CDS	3541337	3541523	+
GWHAAZE00000001	CDS	3542162	3542558	+
GWHAAZE00000001	CDS	3543435	3544455	+

Transcript Sequence
>GWHTAAZE000173 GGTGATGAAGGAAGTTTCTCTTCTGGTAATACAGGGGAAGAAGTACAAGAAAAACAGCTACAGAGCCATTTTCGCGGCTCGAGCTCAGTCCCTACTGCGGCTAATGCAACTAATAGCAATGGTTCCAGCTCTCAACAGCAGCAGCCGGCTGCAGCCAAGAAGAAGAGGAATCTACCCGGAACTCCAGATCCAAGTGCGGAAGTGATCGCGCTATCACCAACGACACTAATGGCGACAAACAGATTTGTGTGTGAGATATGCAATAAGGGGTTTGCAAGGGACCAAAACCTGCAATTGCATAGGAGAGGCCACAATCTTCCATGGAAGCTAAGGCAAAGAATAAGCACAGAGGTGAGAAAGAGAGTTTACATATGCCCCGAGCCAACATGCGTCCACCATAACCCCGCACGCGCATTGGGTGATCTTACGGGAATCAAGAAGCATTTTAGCCGAAAACACGGAGAGAAAAAATGGAAATGTGATAAGTGTTCTAAGAAGTATGCTGTTCAATCTGACTGGAAGGCTCATCAAAAGACCTGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATTTTCTCCAGGAGAGATAGCTTCATAACCCATAGAGCTTTTTGCGACGCACTAGCGGAAGAGAACAACAAAGTAAACCAAGCAGGCCTAGTAATCCCGCCGGAGCCCCAACTCATGTCCTCAATGCCCTTAAATGCCACCACCACCAACACAACAATGGGCATGTCCGAATTCAACAGCTACGACCCCAAAAACCCACTAAGATCCATCCCTCAAGAACTCGTCCCCATGCCATTCAAGCCCATGAACATGTCCACTGGCATGTTCTCGAGCAGCTCAGGGACCCTCTTCGGTAGCCCTAAAAGCATGCCCTCGTCCTCATCTGGCCTCCAGCTTAGCTCAAACGGCCCTCCGAATTTCAACTACAGCCTCCAAGACGCTAGCGCAGGTGCTGCGCCAGTATCTGGGGCAGCCCACATGTCAGCAACTGCATTGCTGCAAAAGGCCGCACAGATGGGCGCGACAGCTAGTAACAGTATCAATTCCCCAATGATGCAGAAGAGCTTCATTAGTAGCATGGCGGGTTCGGATCAAAGACCCCCCTCCTCGTTCGGCGCAATCCAACAACATAATAATTCCTATGAGAATTTCCAGCCCCAAGGTGATTCAGGAGAATTTGGTGCACAAATGTTTAATAAAAGCCCACAAGAAGCTATGAGTGATATGGGAATGTTTAGTGAAATGTTAATGGGAGGTGACCATCAAGGGCACGGTTTCATGAAGAATATGGAACATGAGGATCATAACAGTACTAATTCTGGTTTGATGCAGGGGAGGAATGTGATTGGGCGGAATTCGACCGGACCGTCGAGGTTCGGAGGGAGTGGCGGCCCAGGTTCCGGTGCTGGTAACGATATGTTGACCGTTGACTTTTTGGGAATTGGAGGATCGAGGCCTCCAAATTTGCATGAGCAACAACAAAGATTGGGGTTTGAAGCAATAAGTCAACAAAGAATGCAAGTAATGAATCCTTTTCAGCAACATATTTCACATTCTGATGCAGCAATGGAAAAGCCCATATGGGATGTTTGA

Network for GWHGAAZE000173

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	82	104	0.0018

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.705
	SRR3591706	second leaf	0.882
	SRR3591707	mature leaf	1.653
	SRR3591708	Shoot apex	1.168
	SRR3591709	Stem	3.667
	SRR3591710	White floral bud	8.129
	SRR3591711	White flower	11.446
	SRR3591712	Green floral bud	3.173
	SRR3591713	Yellow flower	14.853
SRP173429	SRR8316895	Juvenile bud stage	1.564
	SRR8316896	Juvenile bud stage	1.867
	SRR8316897	Juvenile bud stage	0.675
	SRR8316894	Third green stage	0.971
	SRR8316900	Third green stage	1.749
	SRR8316901	Third green stage	0.994
	SRR8316898	Complete white stage	1.100
	SRR8316899	Complete white stage	1.580
	SRR8316903	Complete white stage	2.370
	SRR8316902	Silver flowering stage	1.635
	SRR8316904	Silver flowering stage	2.245
	SRR8316905	Silver flowering stage	0.856
	SRR8316906	Gold flowering stage	4.314
	SRR8316907	Gold flowering stage	5.493
	SRR8316908	Gold flowering stage	7.341
SRP132670	SRR6706286	Control	3.784
	SRR6706287	Light intensity 50%	3.652
	SRR6706288	Light intensity 20%	3.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.037
	CNS0095593	Slightly white alabastrum(diploid) 2	1.120
	CNS0095594	Slightly white alabastrum(diploid) 3	1.617
	CNS0095595	Whole white alabastrum(diploid) 2	0.865
	CNS0095596	Whole white alabastrum(diploid) 3	0.536
	CNS0095597	Whole white alabastrum(diploid) 4	0.255
	CNS0095598	Silvery flower (diploied) 1	5.655
	CNS0095599	Silvery flower (diploied) 2	2.895
	CNS0095600	Silvery flower (diploied) 3	4.631
	CNS0095601	Golden flower (diploid) 1	3.269
	CNS0095602	Golden flower (diploid) 2	7.181
	CNS0095603	Golden flower (diploid) 3	5.755
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.651
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.415
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.300
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.176
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.529
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.854
	CNS0095610	Silvery flower (tetraploid) 1	6.782
	CNS0095611	Silvery flower (tetraploid) 2	4.830
	CNS0095612	Silvery flower (tetraploid) 3	9.936
	CNS0095613	Golden flower (tetraploid) 1	5.119
	CNS0095614	Golden flower (tetraploid) 2	9.152
	CNS0095615	Golden flower (tetraploid) 3	8.070
CRA001975	CRR073297	Stem 1	2.642
	CRR073298	Stem 2	1.781
	CRR073299	Stem 3	2.253
	CRR073300	Leaf 1	2.354
	CRR073301	Leaf 2	1.081
	CRR073302	Leaf 3	2.286
	CRR073303	Juvenile bud 1	3.045
	CRR073304	Juvenile bud 2	3.455
	CRR073305	Juvenile bud 3	2.788
	CRR073306	Third green 1	24.195
	CRR073307	Third green 2	11.945
	CRR073308	Third green 3	15.804
	CRR073309	Second white 1	21.234
	CRR073310	Second white 2	27.100
	CRR073311	Second white 3	31.432
	CRR073312	Silver flowering 1	23.836
	CRR073313	Silver flowering 2	22.300
	CRR073314	Silver flowering 3	20.066
	CRR073315	Gold flowering 1	0.086
	CRR073316	Gold flowering 2	0.033
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	8.663
	CRR073319	Tawny withering 2	2.234
	CRR073320	Tawny withering 3	5.693