Gene detail

Detail information of GWHGAAZE000189

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007050786.1	0	Tubby like protein 3 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8VY21\|TLP3_ARATH	0	Tubby-like F-box protein 3
trEMBL	tr\|A0A061DQE6\|A0A061DQE6_THECC	0	Tubby like protein 3 isoform 1 {ECO:0000313\|EMBL:EOX94945.1}
TAIR10	AT2G47900.3	4E-173	tubby like protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	3811607	3816057	-
GWHAAZE00000001	mRNA	3811607	3816057	-
GWHAAZE00000001	exon	3811607	3812087	-
GWHAAZE00000001	exon	3812507	3812686	-
GWHAAZE00000001	exon	3812760	3812898	-
GWHAAZE00000001	exon	3813185	3813272	-
GWHAAZE00000001	exon	3815734	3816057	-
GWHAAZE00000001	CDS	3815734	3816057	-
GWHAAZE00000001	CDS	3813185	3813272	-
GWHAAZE00000001	CDS	3812760	3812898	-
GWHAAZE00000001	CDS	3812507	3812686	-
GWHAAZE00000001	CDS	3811607	3812087	-

Transcript Sequence
>GWHTAAZE000189 ATGAGGGGGGAATTTGGGAGTATTTCAAGAAAAGGGTTTGATGTGAAATTTGGTTATGGGTTAAGGTCAAGGTCTCACAGGGTGGTTCAAGATAGTACTATGGCTGTGGTGGTGAATTTGAAGCAGACTTGTTGGGCTAATTTGCCACCGGAGTTATTGAGAGATGTGTTGATGAGAATTGAGTCCTCTGAATTGGATTGGCCTCCAAGGAAGAACGTCGTTTCTTGTGCTGGTGTTTGTAGGAGTTGGAGAGAAATCATGAAGGAGATTGTCACTACACCGGAAGCTTGTGCTAAGTTAACCTTCCCTATCTCTTTAAAGCAGCCTGGTCCCAGGGACTCTCTCATACAGTGTTTTATAAAGCGGAACCGTAGCACTCAAACTTATCATCTCTACCTCACTTTAGATCAAGCTTCAAATGACAATGGAAAGTTCCTTTTAGCTGCAAGGAAATGTCGACGTCCAACATGCACAGATTACATAATTTCTCTAAATGCTGAAGACATGTCAAAGGGGAGCAGCGCCTACATTGGGAAATTAAGGCAAATTCTATCAAACTTTCTGGGGACCAAGTTCACAATATGTGATGCACAGCCTCCAAATAGTGGGGCCGTAGTTACTAAAGGTCGTTCCTCGAGGGTAGTGGATATGAGACAAGTCTCACCCAGAGTCCCTGCTGGCAGCTATCCTGTTGGACACATTTCTTATGAGTTGAATGTCTTGGGTTCCAGGAGCAGGGGTCCAAGAAGGATGCAATGTGTCATGGATGCGATACCTGCTTCCTCCGTTGAGCCGGGCGGAGTGGCACCCACACAAACCGAATTCCTCCATAGCAATATGGATTCCTTTTCCTCCCGTCCATTTTTCAGATCAAAATCAACCCGCGTGGATAACGTCCAATCTGGACCATTGAATACCCAGAAAAGTAGGATGTTAGTCTTAAAGAACAAGGCCCCTAGGTGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTCAATGGACGAGTAACAGTCGCTTCAGTAAAGAACTTTCAGCTGGTCGCTTCAGTGGAGAATGGACTTAGTGCTGTGCAGGAGCACGAGAATGTGATTCTTCAATTCGGAAAGGTGGGCAAGGACTTGTTCACGATGGATTATCAGTATCCGATCTCCGCATTCCAGGCATTTGCGATCTGTCTTAGCAGCTTTGACACCAAGATTGCCTGTGAATGA

Network for GWHGAAZE000189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	44	92	9.40E-08
PF01167.19	Tub	108	398	6.20E-109

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.349
	SRR3591706	second leaf	24.485
	SRR3591707	mature leaf	33.151
	SRR3591708	Shoot apex	44.285
	SRR3591709	Stem	56.776
	SRR3591710	White floral bud	39.968
	SRR3591711	White flower	53.867
	SRR3591712	Green floral bud	34.215
	SRR3591713	Yellow flower	46.043
SRP173429	SRR8316895	Juvenile bud stage	20.677
	SRR8316896	Juvenile bud stage	29.055
	SRR8316897	Juvenile bud stage	11.974
	SRR8316894	Third green stage	12.711
	SRR8316900	Third green stage	31.160
	SRR8316901	Third green stage	30.585
	SRR8316898	Complete white stage	18.688
	SRR8316899	Complete white stage	58.883
	SRR8316903	Complete white stage	31.004
	SRR8316902	Silver flowering stage	19.982
	SRR8316904	Silver flowering stage	25.410
	SRR8316905	Silver flowering stage	12.389
	SRR8316906	Gold flowering stage	49.183
	SRR8316907	Gold flowering stage	45.768
	SRR8316908	Gold flowering stage	51.894
SRP132670	SRR6706286	Control	23.688
	SRR6706287	Light intensity 50%	24.467
	SRR6706288	Light intensity 20%	24.570
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.416
	CNS0095593	Slightly white alabastrum(diploid) 2	31.248
	CNS0095594	Slightly white alabastrum(diploid) 3	23.892
	CNS0095595	Whole white alabastrum(diploid) 2	20.653
	CNS0095596	Whole white alabastrum(diploid) 3	19.152
	CNS0095597	Whole white alabastrum(diploid) 4	17.110
	CNS0095598	Silvery flower (diploied) 1	44.916
	CNS0095599	Silvery flower (diploied) 2	28.195
	CNS0095600	Silvery flower (diploied) 3	46.420
	CNS0095601	Golden flower (diploid) 1	41.668
	CNS0095602	Golden flower (diploid) 2	48.633
	CNS0095603	Golden flower (diploid) 3	45.474
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.923
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.534
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.697
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.101
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.037
	CNS0095610	Silvery flower (tetraploid) 1	46.829
	CNS0095611	Silvery flower (tetraploid) 2	49.083
	CNS0095612	Silvery flower (tetraploid) 3	41.136
	CNS0095613	Golden flower (tetraploid) 1	40.421
	CNS0095614	Golden flower (tetraploid) 2	46.930
	CNS0095615	Golden flower (tetraploid) 3	63.857
CRA001975	CRR073297	Stem 1	37.896
	CRR073298	Stem 2	35.085
	CRR073299	Stem 3	36.891
	CRR073300	Leaf 1	39.340
	CRR073301	Leaf 2	40.027
	CRR073302	Leaf 3	33.079
	CRR073303	Juvenile bud 1	34.950
	CRR073304	Juvenile bud 2	30.902
	CRR073305	Juvenile bud 3	41.009
	CRR073306	Third green 1	20.095
	CRR073307	Third green 2	20.731
	CRR073308	Third green 3	22.790
	CRR073309	Second white 1	19.701
	CRR073310	Second white 2	18.056
	CRR073311	Second white 3	19.839
	CRR073312	Silver flowering 1	12.639
	CRR073313	Silver flowering 2	8.201
	CRR073314	Silver flowering 3	10.293
	CRR073315	Gold flowering 1	32.808
	CRR073316	Gold flowering 2	42.439
	CRR073317	Gold flowering 3	29.192
	CRR073318	Tawny withering 1	40.724
	CRR073319	Tawny withering 2	35.153
	CRR073320	Tawny withering 3	38.696