Gene detail

Detail information of GWHGAAZE000193

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007201667.1	0	hypothetical protein PRUPE_ppa022314mg, partial [Prunus persica]
Swissprot	tr\|Q8L7G0\|ARFA_ARATH	4E-144	Auxin response factor 1
trEMBL	tr\|M5VPK1\|M5VPK1_PRUPE	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561} (Fragment)
TAIR10	AT1G59750.4	9E-123	auxin response factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	3931851	3937269	+
GWHAAZE00000001	mRNA	3931851	3937269	+
GWHAAZE00000001	exon	3931851	3931930	+
GWHAAZE00000001	exon	3932980	3933092	+
GWHAAZE00000001	exon	3933721	3933816	+
GWHAAZE00000001	exon	3934131	3934181	+
GWHAAZE00000001	exon	3934262	3934420	+
GWHAAZE00000001	exon	3934615	3934699	+
GWHAAZE00000001	exon	3935329	3935419	+
GWHAAZE00000001	exon	3935489	3935653	+
GWHAAZE00000001	exon	3935756	3935884	+
GWHAAZE00000001	exon	3936075	3936157	+
GWHAAZE00000001	exon	3936246	3936410	+
GWHAAZE00000001	exon	3936523	3936812	+
GWHAAZE00000001	exon	3936905	3937095	+
GWHAAZE00000001	exon	3937197	3937269	+
GWHAAZE00000001	five_prime_UTR	3931851	3931857	+
GWHAAZE00000001	CDS	3931858	3931930	+
GWHAAZE00000001	CDS	3932980	3933092	+
GWHAAZE00000001	CDS	3933721	3933816	+
GWHAAZE00000001	CDS	3934131	3934181	+
GWHAAZE00000001	CDS	3934262	3934420	+
GWHAAZE00000001	CDS	3934615	3934699	+
GWHAAZE00000001	CDS	3935329	3935419	+
GWHAAZE00000001	CDS	3935489	3935653	+
GWHAAZE00000001	CDS	3935756	3935884	+
GWHAAZE00000001	CDS	3936075	3936157	+
GWHAAZE00000001	CDS	3936246	3936410	+
GWHAAZE00000001	CDS	3936523	3936812	+
GWHAAZE00000001	CDS	3936905	3937095	+
GWHAAZE00000001	CDS	3937197	3937269	+

Transcript Sequence
>GWHTAAZE000193 GTGAGATATGGGTTCTTCTTTGGGCGAGATGAACTTTCTCAATAACAGCCATGGCCAGTCCAGTGAAAATCATCACCAAGGTGGGGAAGATGATTTGTACAATCAACTATGGCTTGCTTGTGCTGGTCCCTTGGTAAATGTTCCTCGTGTTGGGGATAAGGTTTACTACTTTCCCCAAGGTCATCTCGAACAGGTTGAGGCATACATGAAGCAGGATGGTAATTTTGAAATGCCAATTTACAATATACCTTCTAAAATTCTCTGCAAGGTTGTTTATATTCACTTAAAGGCTGAAGCTAACACTGATGAAGTGTTCGCTCAAATCACTCTGCTTCCAGTGAGGGAAGATCAGCTAAGTACAGAGGAAGCACGTTCTTTATCTCCACCTCAGAAAAGTCGTGCAAAGTCTTTTAGCAAAAGACTTACTCCATCCGATACAAGCACACATGGTGGATTCTCTATTCCTAAGAAATATGCTGATGAATTCTTTCCTACTCTGGACATGTCTCAGGAAGTCCCATCGGAAGAGCTGGTGGTGAAGGATTTGCGTGGGTCCCTATGGCCTTTCCGCCATATCTATCGCGGTCAACCGAAGCGACACTTGCTTACAAGTGGCTGGAGTGTATTTGTCTCTACAAAGAAGCTTACCCCTGGGGATACTGCTATTTTCCTTAGAGGAGAAAATGGGGAAGTCTATGTTGGGGTACGTCGTGCAAGGAAACCAGAAAACACCACAGCAGCATCTGTATTGTCCAGCATCAGCATGCGACATGGCATTCTTGCCACTGCCTTCCATGCCATGACTACTGGATCGATGTTTACTGTTTATTACCGTCCTTGGACTGATCCTGCCCAGTTTTTAGTTCCTTATGATCAATACATGAAGTCGGCTGAAATAAATTATTTATTTGGATTGAGATTTAGGATGGAGTTGGAAAGTGTGGAATGGCCTGAATATATGAACCAAAAATTTACAGGGATTGTAGTTGGCTCCGAAGATATTGATCGCATAAGGTGGCCTGATTCAGAATGGAGACGGCTCAAGGTAACAAGTGCAGTGGGATGCGCATCAGATTTTCGTATGTTGCCAGTCAGGGTTTCTCCGTGGAGCATTGCGCCAATTGGAGACACCAAGAAGAAGAGTATATATTCCCCTTCCAAGAGAGCAAGGCCAATTGACACTACAACGCCTGAGCTCCCTTTTATCATCAATGATGGATTATTAAGGAGTCCTGCTGAGCGTACAAAACAAAGACACTTTGGGGTCTTGCAAGGTCAAGAAAACAAAGCGGTGGGCGCACATGAACTGGATGCGTCAGTTCAACCAAAAGGCAATGGCAAGTTCATGCTTTTTGGATTCGATTTATTCAATACTTGTTTGTCTTCCCCACAAGTGATTTCGTCAAGCGAGCTCAGTAGTCTCTGTAATGGTCCTCCATCTGTATCTCAATCGGCCATTTCCAAAAACAAATGCAGCAACTCAGTCACCATCCGGAGTTGCACAAAGGTGTTGAAGTACGGAACTGCTCTTGGACGGTCAATTGACCTCACACATTTTAAGGAGTACAAGGAACTCATTTACGAGCTTGACAGTATGTTCGACTTAAAAGGGACGTTGGTTGATGGGAGCAGTGGCTGGCACGTAACCTACACAAATGGCAAAGGAAATGTGCTGCCTCTTGGAGATTGCCCTTGGCCGGAGTTTAGGGCGATGGTGCAAAAGATGTTTATTTGCCCAAAGGAAGATGGGGAAAAAGGGGATCTGATGTAA

Network for GWHGAAZE000193

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	135	236	4.70E-21
PF06507.14	Auxin_resp	261	346	8.10E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.171
	SRR3591706	second leaf	0.189
	SRR3591707	mature leaf	0.224
	SRR3591708	Shoot apex	5.609
	SRR3591709	Stem	0.092
	SRR3591710	White floral bud	0.324
	SRR3591711	White flower	0.060
	SRR3591712	Green floral bud	0.529
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.843
	SRR8316896	Juvenile bud stage	0.903
	SRR8316897	Juvenile bud stage	0.410
	SRR8316894	Third green stage	0.552
	SRR8316900	Third green stage	1.978
	SRR8316901	Third green stage	1.773
	SRR8316898	Complete white stage	0.164
	SRR8316899	Complete white stage	2.772
	SRR8316903	Complete white stage	0.235
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.037
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.082
SRP132670	SRR6706286	Control	1.331
	SRR6706287	Light intensity 50%	1.763
	SRR6706288	Light intensity 20%	2.453
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.716
	CNS0095593	Slightly white alabastrum(diploid) 2	0.685
	CNS0095594	Slightly white alabastrum(diploid) 3	0.887
	CNS0095595	Whole white alabastrum(diploid) 2	0.736
	CNS0095596	Whole white alabastrum(diploid) 3	0.791
	CNS0095597	Whole white alabastrum(diploid) 4	0.232
	CNS0095598	Silvery flower (diploied) 1	0.031
	CNS0095599	Silvery flower (diploied) 2	0.024
	CNS0095600	Silvery flower (diploied) 3	0.023
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.051
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.684
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.719
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.078
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.401
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.601
	CNS0095610	Silvery flower (tetraploid) 1	0.044
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.885
	CRR073298	Stem 2	2.271
	CRR073299	Stem 3	2.307
	CRR073300	Leaf 1	4.000
	CRR073301	Leaf 2	3.558
	CRR073302	Leaf 3	3.885
	CRR073303	Juvenile bud 1	4.160
	CRR073304	Juvenile bud 2	2.418
	CRR073305	Juvenile bud 3	3.042
	CRR073306	Third green 1	0.023
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.043
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.001
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.059
	CRR073317	Gold flowering 3	0.305
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.001
	CRR073320	Tawny withering 3	0.000