Gene detail

Detail information of GWHGAAZE000199

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010652082.1	PREDICTED: sister-chromatid cohesion protein 3 isoform X2 [Vitis vinifera]
Swissprot	tr\|O82265\|SCC3_ARATH	Sister-chromatid cohesion protein 3
trEMBL	tr\|D7TP60\|D7TP60_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32283.3}
TAIR10	AT2G47980.1	sister-chromatid cohesion protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4045166	4053141	+
GWHAAZE00000001	mRNA	4045166	4053141	+
GWHAAZE00000001	exon	4045166	4045213	+
GWHAAZE00000001	exon	4045301	4045517	+
GWHAAZE00000001	exon	4046339	4046451	+
GWHAAZE00000001	exon	4046596	4046688	+
GWHAAZE00000001	exon	4047061	4047221	+
GWHAAZE00000001	exon	4047311	4047547	+
GWHAAZE00000001	exon	4047737	4047881	+
GWHAAZE00000001	exon	4048015	4048193	+
GWHAAZE00000001	exon	4048329	4048474	+
GWHAAZE00000001	exon	4048556	4048683	+
GWHAAZE00000001	exon	4049033	4049206	+
GWHAAZE00000001	exon	4049599	4049760	+
GWHAAZE00000001	exon	4049834	4050109	+
GWHAAZE00000001	exon	4050210	4050281	+
GWHAAZE00000001	exon	4050360	4050563	+
GWHAAZE00000001	exon	4050745	4050847	+
GWHAAZE00000001	exon	4051126	4051232	+
GWHAAZE00000001	exon	4051381	4051515	+
GWHAAZE00000001	exon	4051981	4052246	+
GWHAAZE00000001	exon	4052330	4052472	+
GWHAAZE00000001	exon	4052853	4053141	+
GWHAAZE00000001	CDS	4045166	4045213	+
GWHAAZE00000001	CDS	4045301	4045517	+
GWHAAZE00000001	CDS	4046339	4046451	+
GWHAAZE00000001	CDS	4046596	4046688	+
GWHAAZE00000001	CDS	4047061	4047221	+
GWHAAZE00000001	CDS	4047311	4047547	+
GWHAAZE00000001	CDS	4047737	4047881	+
GWHAAZE00000001	CDS	4048015	4048193	+
GWHAAZE00000001	CDS	4048329	4048474	+
GWHAAZE00000001	CDS	4048556	4048683	+
GWHAAZE00000001	CDS	4049033	4049206	+
GWHAAZE00000001	CDS	4049599	4049760	+
GWHAAZE00000001	CDS	4049834	4050109	+
GWHAAZE00000001	CDS	4050210	4050281	+
GWHAAZE00000001	CDS	4050360	4050563	+
GWHAAZE00000001	CDS	4050745	4050847	+
GWHAAZE00000001	CDS	4051126	4051232	+
GWHAAZE00000001	CDS	4051381	4051515	+
GWHAAZE00000001	CDS	4051981	4052246	+
GWHAAZE00000001	CDS	4052330	4052472	+
GWHAAZE00000001	CDS	4052853	4053001	+
GWHAAZE00000001	three_prime_UTR	4053002	4053141	+

Transcript Sequence
>GWHTAAZE000199 ATGGAGGACGAACGTGAACAAGCTTCGGAAACACTGATTCGACGCTCGAAAAGGACCAGGATTCACACTAGCAGTACTGCCGATGTTCAGCCTAGCAAGGCCAATGTTGCTACTGATGGAGTGAACGACGGCAGGACCAGCAATCGGAGGGAACAGAGCCCTACTCAAGAGGAACGCGAAGAAACTTTTGATGACTTGGACGAACTTCCTCCCAAAGCTAAGAGAAATCGGCCTACTACTCATGGACCGGATCAGCCCTTGATTGAGGTTATTAAAGGTAATGGGAAACTTATTCCAGAAATGGTTAAACTATGGGTTGAACACTTTGACAAGGATCCAAAACATGCAACGGTTGAACTCCTGATGATGCTCTTTGAGGCATGTGGCGCAAAGTATCAAATTGAACAAGATTTCCTGGATGAAAGTGATGTTGATGACGTAGTAGTTGCTCTTGTAAATCTGGCTAGGAGTGGGGAAGTTGATGATTGTCAAAGTTCAAAAAAGGAGTTCAAGAATTTCAGGGATAATCTCGTTTCATTTTGGGACAATTTGGTCATTGAGTGCCAAAATGGGCCATTGTTTGATCAGGTCTTGTTCGACAAGTGCATGGACTATATAATCGCATTGTCATGCACTCCCCCCAGAGTTTATCGTCAGGTCGCTTCATTAATGGGGCTGCAGCTTGTCACATCCTTCATTAAAGTTGCTAAAGTTCTTGGTGCACATCGAGAAACAACTCAGAGACAGTTAAATGCTGAGAAGAAGAAAAGATTAAAGGGGCCTCGTGTAGAATCACTTGATAAAAGGCTATCAGTTACGCACGAAAAGATAACAATGACAGAGGAGATGATGCGCAAAATATTTACTGGGTTATTTGTGCATCGGTACAGAGATATTGATCCTGACATCCGAATATCATGCATACAATCACTGGGGGTGTGGATATTGTCATACCCGTCACTATTTTTGTGGGATTTATACTTGAAGTATCTTGGATGGACACTGAATGACAAAAGTGCAGGTGTAAGAAAAGCTTCTATCCTTGCATTGCAAAATCTTTATGAGGTGGATGATAATGTGCCATCTCTTGGTCTTTTTACGGAAAGATTCTATAAACGGATGCTTGAGCTTGCTGATGATATTGATATTTCTGTGGCAGTGTGTGCACTACGCCTTGTAAAACAACTACTGAGACATCAACTCGTTCCAGATGTGGAATTAGGTTCATTATATAATCTACTGATTGATGATTCACCACATATCAGAAGTTCGATTGGGGAACTAGTGTATGATCACTTGATTGCACAGACATTTAATTGCTCCCAATCTCGATCAACAGGTGATGACAGTGATTCTTCCGAGATACATCTTGGCAGAACGCTGCAAATACTGAGAGAATTTTCAGGAGATCAAACGCTCTGTATTTATTTCATCGACGATGTTTGGGAGTACACGGATGCCATGAAAGATTGGAAGCATATAATATCTATGCTACTGGATGAGAACCCATTTGTTGAGCTTACTGATGAGGATGCTACAAATTTAATACGACTTCTCTGTGCATCTGTCAAAAAGGCCGTCGGAGAAAGGATTGTTCCTGCTACTGATTATCGGAAACAGTACTACAGCAAAGCTCAAAGGGAAATGATTGAAAATAATAGGCGGGATATAACTGTCTCTATGATGAAGAACTATCCACAGCTTTTACGTAAATTTATGACTGACAAGGCAAAAGTACCATTACTGGTTGAAGTTATCATTCATATGAACCTTGAGCTTTATTCTCTGAAAAGACAGGATCAGACCTTCAAGGATGTTGTTCAGCTTATTAAAGAAACATTCTTTAAACATGGTGAAAAGGATGCTCTCAGATCTTGTGTTAAAGCTATTAACTTCTGTTCCCTTGAAAGTCGGGGAGAGCTACAAGATTTTGCCAAAAGTAAATTCAAGGAACTTGAGGATGATTTGATTGCTAAGCTCAAATATGCAATGAAAGAAGTCGTGGTATAGTTCTATACATATATATAAATATATCTTCTTATATTCTACTCTTCTTTTTTATGTGGAGTTCGGGTGCACTGCGTATCCAATGGAAGTTTGTATGAAGATATCCTTGTGATTCTTCGTAGATTCCAAGGCATAGATGATGAGGTTGTCAGTTTTCTGCTTCTCAACATGTTTTTGCATGTTGCGTGGTGCCTGCACTCAATTATAAACAGTGAAACCATCTCTGAAGAAGCTCTATCTTCCCTTTTATCTAAACGGACTGCCTTGTTCGAGCAACTTGAATACTTTCTGCAAACTAGATGTGAAGTTCAGGAAGAGGGTCAATGTGGGAATCTCCTCGCATGTCGAGCAAACTTTGTTTTAAAAAAGTTGGAGAATCTAGGATATTGTCCAGATGAATCTGTTCTCCAAAAATATTGGGAACTTTGTGAGAAACAGCTCTATATTTCAGATGAGACAGAAGATGAAGATGTTAACAAAGATTATGTTGAGGAGACATACCGGGACGCAGTTATTATTGCTGCTGCCAAGTTGGTTGCTACTGATGCAATTCCCAAGGAGAATTTGGGTCCCGAGATCATTTCCCACTTTGCGATGCATGGTACACGTGTGGCAGAGATTATTAAGCATCTAATTGTTATTCTAAAGAAGAAGGACGATATCTCCAATATCTTTCTAGAAGCACTGAAAAGGACCTATGGACGACATTTGGCTGTACTTTCTGTTAGCAGTGATGACTCCTTGTCAAGCAAGACATTTCAGGAATGCAAAGATCTGGCTATTCGTCTATCTGGAACTTTTGTGGGAGGTGTTCGAAACAAGCATAGAGCTGACATATTGAAAATCGTCAAGAATGGAATTGAGTATGCCTTTGTGGATGCTCCAAAGCAGCTGTCTTTCTTGGAGGGTGCTGTTCTGCATTTTGTATTCAAGCTCCCAACACCTGTTATACTCAATATATTGCCTTTTGCGAGCAGTCTAAAGGATGTCCAAAAACGAACAGAAAATGTTAAAACGGATGAAAATCTCATCAGCTGGCGCCCTTATTACTTCTTTGTAGATAGCCTACAGGAGAAGTATGCAAAACTTGAAGGTTTGAAAGATGAGAAAGGGGGGACATCTGTAAGAAGCCGTGGCCGTCCACGCAAGAAGTGCAATATAGAGGGAAAGAAACTATTTGATGAACGTGATTCAAGCGAAGAGGATGATTCAATTAGTAGCGACCATGGTCCTCAAGAACAAGAAGAATAAAAACAATTAGAGGAAGAATCGTCTCCTTTTTCTTTTCTTTTTTATGATCAGAAACAACTGCACTTTTAAGGAGCTCCTTCTGTGAACTCAAAGCAACATCCAAGCTCCGATCAATGAAAGTTACAAGAGAGGCCTGATTT

Network for GWHGAAZE000199

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08514.12	STAG	165	268	1.10E-26

Protein Sequence

>GWHPAAZE000199
MEDEREQASETLIRRSKRTRIHTSSTADVQPSKANVATDGVNDGRTSNRREQSPTQEEREETFDDLDELPPKAKRNRPTTHGPDQPLIEVIKGNGKLIPEMVKLWVEHFDKDPKHATVELLMMLFEACGAKYQIEQDFLDESDVDDVVVALVNLARSGEVDDCQSSKKEFKNFRDNLVSFWDNLVIECQNGPLFDQVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFIKVAKVLGAHRETTQRQLNAEKKKRLKGPRVESLDKRLSVTHEKITMTEEMMRKIFTGLFVHRYRDIDPDIRISCIQSLGVWILSYPSLFLWDLYLKYLGWTLNDKSAGVRKASILALQNLYEVDDNVPSLGLFTERFYKRMLELADDIDISVAVCALRLVKQLLRHQLVPDVELGSLYNLLIDDSPHIRSSIGELVYDHLIAQTFNCSQSRSTGDDSDSSEIHLGRTLQILREFSGDQTLCIYFIDDVWEYTDAMKDWKHIISMLLDENPFVELTDEDATNLIRLLCASVKKAVGERIVPATDYRKQYYSKAQREMIENNRRDITVSMMKNYPQLLRKFMTDKAKVPLLVEVIIHMNLELYSLKRQDQTFKDVVQLIKETFFKHGEKDALRSCVKAINFCSLESRGELQDFAKSKFKELEDDLIAKLKYAMKEVVVFYTYIIYLLIFYSSFLCGVRVHCVSNGSLYEDILVILRRFQGIDDEVVSFLLLNMFLHVAWCLHSIINSETISEEALSSLLSKRTALFEQLEYFLQTRCEVQEEGQCGNLLACRANFVLKKLENLGYCPDESVLQKYWELCEKQLYISDETEDEDVNKDYVEETYRDAVIIAAAKLVATDAIPKENLGPEIISHFAMHGTRVAEIIKHLIVILKKKDDISNIFLEALKRTYGRHLAVLSVSSDDSLSSKTFQECKDLAIRLSGTFVGGVRNKHRADILKIVKNGIEYAFVDAPKQLSFLEGAVLHFVFKLPTPVILNILPFASSLKDVQKRTENVKTDENLISWRPYYFFVDSLQEKYAKLEGLKDEKGGTSVRSRGRPRKKCNIEGKKLFDERDSSEEDDSISSDHGPQEQEE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06671	STAG1_2, SCC3, IRR1	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.945
	SRR3591706	second leaf	3.354
	SRR3591707	mature leaf	4.037
	SRR3591708	Shoot apex	7.856
	SRR3591709	Stem	4.865
	SRR3591710	White floral bud	4.633
	SRR3591711	White flower	6.206
	SRR3591712	Green floral bud	6.087
	SRR3591713	Yellow flower	4.469
SRP173429	SRR8316895	Juvenile bud stage	2.485
	SRR8316896	Juvenile bud stage	4.074
	SRR8316897	Juvenile bud stage	2.489
	SRR8316894	Third green stage	1.526
	SRR8316900	Third green stage	2.597
	SRR8316901	Third green stage	2.954
	SRR8316898	Complete white stage	0.632
	SRR8316899	Complete white stage	3.868
	SRR8316903	Complete white stage	1.475
	SRR8316902	Silver flowering stage	0.657
	SRR8316904	Silver flowering stage	0.895
	SRR8316905	Silver flowering stage	0.399
	SRR8316906	Gold flowering stage	2.945
	SRR8316907	Gold flowering stage	1.882
	SRR8316908	Gold flowering stage	3.704
SRP132670	SRR6706286	Control	2.775
	SRR6706287	Light intensity 50%	2.608
	SRR6706288	Light intensity 20%	2.839
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.938
	CNS0095593	Slightly white alabastrum(diploid) 2	1.799
	CNS0095594	Slightly white alabastrum(diploid) 3	1.351
	CNS0095595	Whole white alabastrum(diploid) 2	1.544
	CNS0095596	Whole white alabastrum(diploid) 3	1.012
	CNS0095597	Whole white alabastrum(diploid) 4	1.743
	CNS0095598	Silvery flower (diploied) 1	2.780
	CNS0095599	Silvery flower (diploied) 2	2.641
	CNS0095600	Silvery flower (diploied) 3	1.980
	CNS0095601	Golden flower (diploid) 1	2.460
	CNS0095602	Golden flower (diploid) 2	2.133
	CNS0095603	Golden flower (diploid) 3	2.200
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.243
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.731
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.533
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.934
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.790
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.182
	CNS0095610	Silvery flower (tetraploid) 1	2.796
	CNS0095611	Silvery flower (tetraploid) 2	2.097
	CNS0095612	Silvery flower (tetraploid) 3	1.709
	CNS0095613	Golden flower (tetraploid) 1	1.287
	CNS0095614	Golden flower (tetraploid) 2	2.411
	CNS0095615	Golden flower (tetraploid) 3	1.086
CRA001975	CRR073297	Stem 1	2.327
	CRR073298	Stem 2	2.583
	CRR073299	Stem 3	1.183
	CRR073300	Leaf 1	1.951
	CRR073301	Leaf 2	1.970
	CRR073302	Leaf 3	0.646
	CRR073303	Juvenile bud 1	0.619
	CRR073304	Juvenile bud 2	0.638
	CRR073305	Juvenile bud 3	0.732
	CRR073306	Third green 1	0.083
	CRR073307	Third green 2	0.020
	CRR073308	Third green 3	0.199
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.104
	CRR073311	Second white 3	0.153
	CRR073312	Silver flowering 1	0.207
	CRR073313	Silver flowering 2	0.084
	CRR073314	Silver flowering 3	0.112
	CRR073315	Gold flowering 1	0.497
	CRR073316	Gold flowering 2	1.060
	CRR073317	Gold flowering 3	0.579
	CRR073318	Tawny withering 1	3.735
	CRR073319	Tawny withering 2	2.907
	CRR073320	Tawny withering 3	2.355