Gene detail

Detail information of GWHGAAZE000200

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009593090.1	0	PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Nicotiana tomentosiformis]
COG	YP_001661272.1	3E-24	serine/threonine protein kinase
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	7E-17	Protein Mut11
trEMBL	tr\|F6HQ31\|F6HQ31_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56787.1}
TAIR10	AT2G47990.1	8E-166	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4056026	4057627	-
GWHAAZE00000001	mRNA	4056026	4057627	-
GWHAAZE00000001	exon	4056026	4057627	-
GWHAAZE00000001	CDS	4056026	4057627	-

Transcript Sequence
>GWHTAAZE000200 ATGGCGGTAGAAGATCAATCAACCTTAACAAAAACCTTCCCGGTAAAACCCAACCTCAAACCCACTTCCAAGAAATCCACAACAACTTCCCCAGAATCAAAATACTGGAAATCATTCAAACCCCAACACCAAAAACCCCAAACCCTAATCTCCTCCATAACCTCCTTAGCATTCTCACCAATCTCCCCTCACGATTTCGCTGCCACCCATTCAGCCACCGTCACAATCTTCTCTTCCCAAACCCTAGAAATCAAATCTTCCATCTCCGCTTTTTCCGACACCGCCACGTCAGCCTCTTACCGCTCCGACGGAAGATTAATTGCCGCCGGGTCCCACTCCGGCAAAGTCCAGGTATTTGATGTTAAGACCCGGGTTCCGCTCCGTCAACTTACTGGCCATACCCGACCCGTCCACGTAGTTAAATACCCCCGCCTCGATAAGCTCCATCTCTTCTCGGGCGGCGATGATGCGGTTGTTAAGTACTGGGACGTGGCTGAAAGTTCGAAGATTCGAGACATGCTGGGTCATAAAGATTATGTTAGGTGTGGGGATGGATCACCTGCTAGTGATGATATGTTTGTTACTGGTTCTTATGACCATACAATTAGGGTTTGGGATGTTAGGGTTTCTAGCCCTAGTTCAGTTATAGAGATTAATCATGGGAAACCGGTGGAGGATGTAATTTATTTGCCGTCTGGAGGGTTAATTGCGACCGCGGGTGGGAATTCTGTTAAGATTTGGGATGTGATTGGTGGTGGGAAGTTATTGTATTCTATGGAAAGCCATAATAAGACGGTGACTTCAATCTGTCTGGGGAAAATTGGGAGAGAAAGTGGGGAAGGAGGTCAACAGAATCGGATTTTGAGTGTTTCTTTAGATGGGTATATGAAGGTTTTCGATTATGCCAAATTCAAGATTACTCATTCGATGAGGTTCCCATCGGCTTTATTGTCGATAGCATTTTCGCCAGATAGTTCGACAAGGGTGATTGGTACTTCTAGTGGTGTTTTATATGCCGGGAAGAGGAAAATGAGTGAAAATATTGTGTCTGAGGTTGGTGAGTTTGCAGGTTCTGGTGCAATGGAGGATTCGAAGAAGAAGATGTTGAGGCCTTCATATTTTAGGTACTTCCATAGAAGCCAAAATGAGAAGCCTTCGGAAGGGGATTATGTGATCCCTAGGCTGAAGAAGGTGAAAATGGCTGAGCATGACAAGTTACTGAAGAAGTTTAGGCATAAAGAAGCCTTGGTTTGTGCATTGAAAGGGAAGAATCCTGAGAATGTGGTGGCGGTAATGGAGGAATTGGTGGCTCGAAAAAAGTTATTGATGTGTGTGCAGAATTTGGAGACTGAAGAGGAGCTAGGGAGGTTGTTAGGGTTTCTTCAGAAGTACAGTACAGTGCCAAGGTATGCAGGATTGTTGATGGGTTTGGCCAAGAAAGTAGTTGAAATGAGAGCTGAAGATATTAGGGCTTCTGATGAATTAAGAGGTCATATAAGGAATCTAAAGAGATCGGTTGAGGAGGAGATAAGGATACAACAGGCATTGCACGAGATTCAGGGTATAATTTCTCCTCTGCTGAGGATTGCGGGGAGAAGATAA

Network for GWHGAAZE000200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	126	163	0.15
PF00400.33	WD40	173	206	0.003
PF00400.33	WD40	219	248	0.05
PF09384.11	UTP15_C	382	526	2.20E-34

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14549	UTP15	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006364	biological_process	rRNA processing
GO:0005730	cellular_component	nucleolus
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.333
	SRR3591706	second leaf	4.967
	SRR3591707	mature leaf	6.145
	SRR3591708	Shoot apex	12.587
	SRR3591709	Stem	6.378
	SRR3591710	White floral bud	7.545
	SRR3591711	White flower	17.038
	SRR3591712	Green floral bud	11.870
	SRR3591713	Yellow flower	10.755
SRP173429	SRR8316895	Juvenile bud stage	9.088
	SRR8316896	Juvenile bud stage	13.720
	SRR8316897	Juvenile bud stage	4.997
	SRR8316894	Third green stage	6.152
	SRR8316900	Third green stage	17.740
	SRR8316901	Third green stage	13.865
	SRR8316898	Complete white stage	3.156
	SRR8316899	Complete white stage	14.374
	SRR8316903	Complete white stage	5.584
	SRR8316902	Silver flowering stage	4.818
	SRR8316904	Silver flowering stage	6.815
	SRR8316905	Silver flowering stage	3.260
	SRR8316906	Gold flowering stage	10.824
	SRR8316907	Gold flowering stage	9.211
	SRR8316908	Gold flowering stage	11.919
SRP132670	SRR6706286	Control	10.149
	SRR6706287	Light intensity 50%	9.798
	SRR6706288	Light intensity 20%	10.862
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.560
	CNS0095593	Slightly white alabastrum(diploid) 2	10.654
	CNS0095594	Slightly white alabastrum(diploid) 3	8.561
	CNS0095595	Whole white alabastrum(diploid) 2	8.504
	CNS0095596	Whole white alabastrum(diploid) 3	8.656
	CNS0095597	Whole white alabastrum(diploid) 4	5.565
	CNS0095598	Silvery flower (diploied) 1	9.667
	CNS0095599	Silvery flower (diploied) 2	7.676
	CNS0095600	Silvery flower (diploied) 3	8.903
	CNS0095601	Golden flower (diploid) 1	7.798
	CNS0095602	Golden flower (diploid) 2	9.318
	CNS0095603	Golden flower (diploid) 3	9.445
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.279
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.609
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.776
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.904
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.065
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.372
	CNS0095610	Silvery flower (tetraploid) 1	12.593
	CNS0095611	Silvery flower (tetraploid) 2	13.330
	CNS0095612	Silvery flower (tetraploid) 3	7.094
	CNS0095613	Golden flower (tetraploid) 1	7.416
	CNS0095614	Golden flower (tetraploid) 2	12.980
	CNS0095615	Golden flower (tetraploid) 3	7.535
CRA001975	CRR073297	Stem 1	10.404
	CRR073298	Stem 2	10.305
	CRR073299	Stem 3	9.015
	CRR073300	Leaf 1	8.511
	CRR073301	Leaf 2	7.141
	CRR073302	Leaf 3	6.716
	CRR073303	Juvenile bud 1	8.561
	CRR073304	Juvenile bud 2	5.778
	CRR073305	Juvenile bud 3	9.562
	CRR073306	Third green 1	1.573
	CRR073307	Third green 2	1.671
	CRR073308	Third green 3	2.336
	CRR073309	Second white 1	5.254
	CRR073310	Second white 2	5.411
	CRR073311	Second white 3	4.408
	CRR073312	Silver flowering 1	3.399
	CRR073313	Silver flowering 2	3.360
	CRR073314	Silver flowering 3	5.081
	CRR073315	Gold flowering 1	5.249
	CRR073316	Gold flowering 2	8.217
	CRR073317	Gold flowering 3	5.131
	CRR073318	Tawny withering 1	8.965
	CRR073319	Tawny withering 2	6.183
	CRR073320	Tawny withering 3	10.338