Gene detail

Detail information of GWHGAAZE000215

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009789682.1	0	PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Nicotiana sylvestris]
Swissprot	tr\|Q0WPJ7\|RF298_ARATH	1E-141	Putative E3 ubiquitin-protein ligase RF298
trEMBL	tr\|K4C3S0\|K4C3S0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g008900.2.1}
TAIR10	AT4G03000.2	2E-109	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4269398	4272327	-
GWHAAZE00000001	mRNA	4269398	4272327	-
GWHAAZE00000001	exon	4269398	4269934	-
GWHAAZE00000001	exon	4270561	4272327	-
GWHAAZE00000001	CDS	4270561	4272327	-
GWHAAZE00000001	CDS	4269398	4269934	-

Transcript Sequence
>GWHTAAZE000215 ATGGCCGATAATAGTGGTGATAGCAAAGGGTTCCCTTCCGCATCATCCCCAAAAGAAGGAAATAGGAACAAGGGAATACAGTTAGCTGATTTATGCTCTCCTGACATTCCGGACCTGTCCTCGTCTCTTATGGAATTCCCTCTATACGAGCTTTTACCGGAAAAAATTCAAGAGGCACTGATCAAGTTTGGGTCATCATCAGAGGCAAATTGTGATCACGTTAAAGAAGGAAAAAAAGGTGCAAGAGGGTTCCTAGAGAAAGAGTGGAATGATCCTATAGTATGTGAACTAGAGCAACTTTTGTCCCATGATTTGGGTGCTACATTCCGATCTGCGATCCAGAAGATTGTTGAATGTGGGCACACTGAGGAGGTTGCAGAGTGGGCCGTTTTGAGGAGTGGGATTTATTGCGGTTTTAAAGATGCGGTGTCGAATATCGTTGATGGTGCTTTGGCTTATTTGGAGAAAGAGAAGGAATTTGATACTCAAGGAATTCATGCATTTGAGGATTTACATAGCGTAGCGAGTTACACAATGTTGGAGATGGTATGTGTGCTTAGGGAACTCAGGCCGGCTTTATCTATTGCGGAAGCAATTTGGTGCCTTTTGATATGTGACTCGAATTTGTCACATTTGTGTTCGGTGAAAGGCAATCCATGGACTGCTAAAATTATATTGGGAGAAAGCCCAGGTTCTAAATCTCCTCACTCGAAATCATATGACAAAAATGAAAAACCACCAATCCCAAATCTTCAATTTGGTGAAGTCACTTACGATCCTAATGCAAAGAGCCCCCATGTTAGTGAAGGTCCTAAAGAAAGTTTGGTTCAGCTTTCTGTCACTCGAACTACTATCACTGGAGAAAAAACCGGGGGTAGTAGAAGAGGTGCATCAAGGAGAGACATCCTTCGACAGAAGACGTTACTTTTCGAGAAAAATTGCAAGGGCCATTTGCCCAAGGGGGCTTACAAGGCGAGACTCACAACCTTGGGAAATATGGTATTGGAGAAGAAGCTAAAGAATATTTCAACTACAAGCATCAAAATTGGAGCTAATCCACCTCTGGCTGGTGGAAGCCATAATCTTTCAAGCAATAACCCCTCATGTACCACCCCCTCTACATTGCCCAAGAAAGATGCCATTTCCGAAGAAAAACAGAGTCAAGATTCTTCTTCTAAGAATCTTGATTATTATGCTCAGATCCCATATGACGAGTCTACAGGGAAGTACGTTCCCCAAGGCGATAGGGACGAAGTGATGTTGTCTCTCCTTAACATGTGTTCAGATGCAGAGAAAGATATACAAAATTGGACCAAATGGGCCAATGAGAAGGTTATGCAGGCGGCTCGTCGACTCGGCCAGGATAATCAGGAGCTGAAGAAGTTAAGGGCTGAGAAAGAAGAATTTCAGAAATTTCAGAAAGATAAGAAAATCTCAGAGGAAAATAGCATGAAGAGGCTAGGTGAGATGGAGTGTGCAATTGTGAATGCTAGTGGACAAATTGAGATGGCAAATGCTACTGCCAAGAAGCTTGAGGCAGAAAATGAGGTACTGAAGAAAGAGATGGATGGGTACGTGCTTGAGGCTCAAAGGGCATTTGAGAACATGAAGGAAGCTGAGTTGAAGGCGCAGGAGGCACTGAAAAGCACGCAATTTTGGGAACGGAAGAAGGCTTTGTTGCAAGAGGATGTGAAGAATACAAAAGGGAGGATAAACGGAGTTCTAAGGGGAGTTGAAAAGGATAAAGATCGTCTCAGACAAATTAAGGTTCAAAGGGAACAGGTGGCGACGGAGATGGCAGGACTGAATAACTTAGTCGACTCCATTATTTCAAAGAGGGAACAAATGATTGCTGCAGCACAAGCAGACAACGACCTGACGAGACAAAAGGCTGAAGACGAGAAAAAGAAGCTCAAAGATGACATCAAAAAGCTTGAAACTGAAATATCCGAGCTGAAACTACAGGCTGAAGCGTCAAAGATAGCTGCACTTCGCAAGGGCATCAGTTTTAACCTTGGTGAGCCCCCCATAGATGTCCAGGGTGCCCCAAATCTGTGGGGATTTAGTGCTGCCCCTAAAGTTTCAAAGAGGCTGCCATTTTTCCGGGATAATTTTGGGGAAGGGAGGGATAGAGAGTGTGTAATGTGCTTGAACGAGGACAAATCGGTGGTGTTCCTCCCTTGTGCTCACCAGGTTGTGTGTGAGAAATGCAACGTGCTACATGAGGAGGAAGGAATGAAAGATTGCCCTGCATGCAGGACTCCAATAAAGAGGCGGGTCAATGCACGTTTTTCTGGGCTTTAG

Network for GWHGAAZE000215

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.7	zf-C3HC4_3	710	758	6.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.545
	SRR3591706	second leaf	7.089
	SRR3591707	mature leaf	11.354
	SRR3591708	Shoot apex	18.913
	SRR3591709	Stem	9.971
	SRR3591710	White floral bud	17.515
	SRR3591711	White flower	19.434
	SRR3591712	Green floral bud	15.098
	SRR3591713	Yellow flower	14.569
SRP173429	SRR8316895	Juvenile bud stage	16.557
	SRR8316896	Juvenile bud stage	19.253
	SRR8316897	Juvenile bud stage	8.196
	SRR8316894	Third green stage	7.694
	SRR8316900	Third green stage	17.593
	SRR8316901	Third green stage	15.736
	SRR8316898	Complete white stage	3.237
	SRR8316899	Complete white stage	18.579
	SRR8316903	Complete white stage	9.952
	SRR8316902	Silver flowering stage	4.808
	SRR8316904	Silver flowering stage	8.021
	SRR8316905	Silver flowering stage	3.436
	SRR8316906	Gold flowering stage	13.863
	SRR8316907	Gold flowering stage	13.715
	SRR8316908	Gold flowering stage	11.945
SRP132670	SRR6706286	Control	22.370
	SRR6706287	Light intensity 50%	19.278
	SRR6706288	Light intensity 20%	18.481
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.730
	CNS0095593	Slightly white alabastrum(diploid) 2	11.444
	CNS0095594	Slightly white alabastrum(diploid) 3	11.484
	CNS0095595	Whole white alabastrum(diploid) 2	10.995
	CNS0095596	Whole white alabastrum(diploid) 3	6.583
	CNS0095597	Whole white alabastrum(diploid) 4	10.659
	CNS0095598	Silvery flower (diploied) 1	21.671
	CNS0095599	Silvery flower (diploied) 2	19.772
	CNS0095600	Silvery flower (diploied) 3	17.723
	CNS0095601	Golden flower (diploid) 1	24.302
	CNS0095602	Golden flower (diploid) 2	23.164
	CNS0095603	Golden flower (diploid) 3	23.012
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.669
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.596
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.944
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.149
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.777
	CNS0095610	Silvery flower (tetraploid) 1	23.650
	CNS0095611	Silvery flower (tetraploid) 2	24.028
	CNS0095612	Silvery flower (tetraploid) 3	11.166
	CNS0095613	Golden flower (tetraploid) 1	11.347
	CNS0095614	Golden flower (tetraploid) 2	20.556
	CNS0095615	Golden flower (tetraploid) 3	11.572
CRA001975	CRR073297	Stem 1	23.258
	CRR073298	Stem 2	19.824
	CRR073299	Stem 3	14.599
	CRR073300	Leaf 1	21.788
	CRR073301	Leaf 2	18.866
	CRR073302	Leaf 3	8.640
	CRR073303	Juvenile bud 1	10.331
	CRR073304	Juvenile bud 2	7.794
	CRR073305	Juvenile bud 3	15.523
	CRR073306	Third green 1	1.226
	CRR073307	Third green 2	1.793
	CRR073308	Third green 3	2.647
	CRR073309	Second white 1	2.440
	CRR073310	Second white 2	4.143
	CRR073311	Second white 3	4.442
	CRR073312	Silver flowering 1	2.841
	CRR073313	Silver flowering 2	3.201
	CRR073314	Silver flowering 3	3.203
	CRR073315	Gold flowering 1	8.047
	CRR073316	Gold flowering 2	12.843
	CRR073317	Gold flowering 3	5.973
	CRR073318	Tawny withering 1	9.694
	CRR073319	Tawny withering 2	7.570
	CRR073320	Tawny withering 3	7.556