Gene detail

Detail information of GWHGAAZE000220

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002273388.1	PREDICTED: uncharacterized protein LOC100249461 [Vitis vinifera]
trEMBL	tr\|F6HQ47\|F6HQ47_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56803.1}
TAIR10	AT4G02990.1	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4338558	4340177	-
GWHAAZE00000001	mRNA	4338558	4340177	-
GWHAAZE00000001	exon	4338558	4340177	-
GWHAAZE00000001	CDS	4338558	4340177	-

Transcript Sequence
>GWHTAAZE000220 ATGTTGTGTGGTGCAGATTCTTTGAATGTGCAGGACTTGTCAAACATGAAGCTCATAGGCTGTACTGCCATTACAAAACCGAGTTTTTTGCTTGTACAGTACGAGTTATCTGCCCTCTCATTTTGTCAACACCGTCTGACTTCAGAATCAAATCTGTGGATTTCAAGTAATCATGGGAAAAGAATTGGACTGGTGAGAAAATTGCAATGCTCAGTTGCTATTCGACAATTTGCATCCAGTTCTGTAGATTCATCAGTGTCGAAGCCAAAGACCACCCGTTCGGGTCGAAAACATGAAGGTTCGTCTTCCTTATATGGTCGTCCTAGTTTATTAGAGATGAAGAATGAGAGGATAGAAAACCGTGCCCGTGTCTATGAATTCTTGAGAGGAATTGGCATTGTACCTGACGAGCTCGATGGATTGGAGCTTCCCGTGACGGTTGAGGTTATGCAGGAACGAGTGGAATTCCTTCACACATTAGGGCTTACAATAGAAGACATCAACAACTACCCTCTTGTTCTTGGCTGTAGTGTGAAGAAAAACATGATTCCTGTGCTTGATTACCTTGGCAAACTTGGTGTTAGGAAAGATACGCTAACAAATTTCTTGCAACGGTATCCACAAGTTCTTCATGCTAGTGTCGTAGTAGACCTTGCACCAGTTGTCAAATATCTTCAAGGAATGGACATTAAGCCAAACGATATACCTCGGGTTTTGGAGAAGTATCCCGAAGTAATGGGATTTAAGCTCGAGGGCACCATGAGCACATCTGTTGCTTATTTGGTTGGGATTGGGGTGGCAAGAAGAGAAATTGGCGGGGTTCTAACTAGATACCCGGAGATATTGGGGATGCGTGTAGGCCGTGTGATCAAACCCTTTGTGGAATATTTAGAAACATTGGGTATTCCAAGATTGGCTGTGGCTAGATTGATTGAGAAGCGGCCCCACATTCTTGGATTTGCACTTGAAGAGAGGATAAAACCAAATGTTGAATCGCTTTTAGAGTTTGAGGTTAGGCAAATGTCACTTGCTTCTGTGATTGCCCAATATCCTGAAGTTATAGGAATTGACTTGAAGCCGAAGATTCTAAGTCAACGAAGCTTTCTCAATTCTGTTATTGGTATGCATGCCGAAGATTTTGCTAGAGTTGTTGAGAAGATGCCGCAAATCATCAGTCTCAGTAATTCGCCAGTAGTGAAGCATGTTGATTTCCTCAAGGAATGTGGGTTCTCATTAGAACAAGTGAGAAAGATGGTCGTTGGGTGTCCCCAATTGCTTGCCTTGAATCTTGGTATTATGAAACTCAATTTTGATTATTTCCAAAGCAAGATGGGAAGGCCATTGGAGGACTTGGTAGCTTTCCCGGCTTTCTTTACTTATGGTTTGGAGTCCACTATTAAACCAAGGCATAAGATGGTTGCAAAGAAGGGGTTGAAATGTTCGCTCGCCTGGCTTCTTAACTGCTCCAATGAGAAATTTGAGGAACGGATGACCTTTGACACAATTGACATGGAGGAAATGGAAATGGATTCATCATTTGATATGAATACTCTAATGGAACCCAGGGGTGATGAGTCAGCGTCTGACTATGAAGACGACAGTGATGATGAGTATATATAG

Network for GWHGAAZE000220

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	186	494	2.40E-107

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.123
	SRR3591706	second leaf	29.607
	SRR3591707	mature leaf	39.510
	SRR3591708	Shoot apex	32.435
	SRR3591709	Stem	12.639
	SRR3591710	White floral bud	29.838
	SRR3591711	White flower	44.844
	SRR3591712	Green floral bud	40.601
	SRR3591713	Yellow flower	41.696
SRP173429	SRR8316895	Juvenile bud stage	14.407
	SRR8316896	Juvenile bud stage	18.256
	SRR8316897	Juvenile bud stage	6.802
	SRR8316894	Third green stage	8.992
	SRR8316900	Third green stage	38.325
	SRR8316901	Third green stage	27.293
	SRR8316898	Complete white stage	10.633
	SRR8316899	Complete white stage	39.213
	SRR8316903	Complete white stage	13.171
	SRR8316902	Silver flowering stage	9.077
	SRR8316904	Silver flowering stage	14.907
	SRR8316905	Silver flowering stage	6.816
	SRR8316906	Gold flowering stage	21.934
	SRR8316907	Gold flowering stage	22.105
	SRR8316908	Gold flowering stage	17.990
SRP132670	SRR6706286	Control	20.235
	SRR6706287	Light intensity 50%	22.708
	SRR6706288	Light intensity 20%	26.705
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.707
	CNS0095593	Slightly white alabastrum(diploid) 2	10.096
	CNS0095594	Slightly white alabastrum(diploid) 3	10.573
	CNS0095595	Whole white alabastrum(diploid) 2	15.557
	CNS0095596	Whole white alabastrum(diploid) 3	15.510
	CNS0095597	Whole white alabastrum(diploid) 4	12.653
	CNS0095598	Silvery flower (diploied) 1	22.196
	CNS0095599	Silvery flower (diploied) 2	17.136
	CNS0095600	Silvery flower (diploied) 3	38.543
	CNS0095601	Golden flower (diploid) 1	17.702
	CNS0095602	Golden flower (diploid) 2	35.063
	CNS0095603	Golden flower (diploid) 3	34.623
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.560
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.701
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.147
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.059
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.821
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.219
	CNS0095610	Silvery flower (tetraploid) 1	36.027
	CNS0095611	Silvery flower (tetraploid) 2	57.103
	CNS0095612	Silvery flower (tetraploid) 3	50.955
	CNS0095613	Golden flower (tetraploid) 1	20.565
	CNS0095614	Golden flower (tetraploid) 2	31.687
	CNS0095615	Golden flower (tetraploid) 3	28.208
CRA001975	CRR073297	Stem 1	34.516
	CRR073298	Stem 2	33.735
	CRR073299	Stem 3	36.701
	CRR073300	Leaf 1	35.228
	CRR073301	Leaf 2	27.797
	CRR073302	Leaf 3	41.357
	CRR073303	Juvenile bud 1	43.486
	CRR073304	Juvenile bud 2	42.645
	CRR073305	Juvenile bud 3	41.427
	CRR073306	Third green 1	19.538
	CRR073307	Third green 2	13.606
	CRR073308	Third green 3	20.476
	CRR073309	Second white 1	43.914
	CRR073310	Second white 2	26.761
	CRR073311	Second white 3	24.760
	CRR073312	Silver flowering 1	26.550
	CRR073313	Silver flowering 2	27.111
	CRR073314	Silver flowering 3	20.289
	CRR073315	Gold flowering 1	76.203
	CRR073316	Gold flowering 2	102.033
	CRR073317	Gold flowering 3	103.946
	CRR073318	Tawny withering 1	13.568
	CRR073319	Tawny withering 2	8.910
	CRR073320	Tawny withering 3	12.034