Gene detail

Detail information of GWHGAAZE000227

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601150.1	4.60277E-49	PREDICTED: probable glutathione peroxidase 5 [Nicotiana tomentosiformis]
COG	YP_007511424.1	4E-28	glutathione peroxidase
Swissprot	tr\|O23968\|GPX4_HELAN	7E-44	Probable phospholipid hydroperoxide glutathione peroxidase
trEMBL	tr\|A0A061DRV5\|A0A061DRV5_THECC	5E-49	Glutathione peroxidase {ECO:0000256\|RuleBase:RU000499}
TAIR10	AT2G48150.1	1E-33	glutathione peroxidase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4520129	4522747	+
GWHAAZE00000001	mRNA	4520129	4522747	+
GWHAAZE00000001	exon	4520129	4520365	+
GWHAAZE00000001	exon	4520852	4520913	+
GWHAAZE00000001	exon	4521565	4521683	+
GWHAAZE00000001	exon	4522179	4522346	+
GWHAAZE00000001	exon	4522478	4522747	+
GWHAAZE00000001	five_prime_UTR	4520129	4520365	+
GWHAAZE00000001	five_prime_UTR	4520852	4520913	+
GWHAAZE00000001	five_prime_UTR	4521565	4521599	+
GWHAAZE00000001	CDS	4521600	4521683	+
GWHAAZE00000001	CDS	4522179	4522346	+
GWHAAZE00000001	CDS	4522478	4522504	+
GWHAAZE00000001	three_prime_UTR	4522505	4522747	+

Transcript Sequence
>GWHTAAZE000227 ATTGAATTTGGTGGCCAAGCTGTAAACTTGTCTTTTCCAACTGTTCAAGATTGCATTTGCCCCTCTGTCTCTTCCACTTGCCCTAAAACGCCATCTTCTTCTTCTTCTTCTTCTTCTTGTACAATAGATACTTTTTTAATATACAACTTTATACAGCTTCTTAACTAAAAACCCCTCTTCCCAATGGGGGCTTCTTCATCAATCCCTCAGCAATCTCTCCACGAATTTTCTGTCAAGTGGGTTTACTGATTCAAACTACACCCAGTTAACTGAGCTTTACAACAAATACAAGAACCAAGGTTTTGAGATCTTGGCGTTCCCATGCAATCAATTCATGAAGCAAGAACCTGGGAGCGGAGAGGAGGCCCAAGAATTTGCTTGTACAAGATACAAGGCTGAATATCCTATCTTCCAAAAGGTACGTGTCAATGGCCCAAAAACAGAACCTGTTTACCAATTCCTCAAAGCAAGTAAAGGTGGATTTCTCGGTTCTAGCATCAAGTGGAATTTCACCAAGTTTCTAATTGATAAAGAAGGTTGGGTCATTGGCCGTTATGGTCCAACTACCACCCCACTAGCCATTGAGAAGTCTATCAAGAAAGCATTGGGATAAGAGTGAGATATTAGTAGTAGATGAGTTAATACTTTTGAGGACATTATGGAGTTCCACAAAGAAAGTTTGGGATGATGATCCATTTGGTTAATGATTATGTGTTTTATCCTGTTTCTGGTCCTTGTCTTATTTGGTTGTTATTGATAAATTATATTGTACATTGCAACTGTGTATGCACTCGGCTGAAGTCTGTATAAAATCCTAATTTAGCAGTTTAATGCAAGTGTATGCTGTTTGTGTGTA

Network for GWHGAAZE000227

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00255.20	GSHPx	2	44	1.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00432	gpx, btuE, bsaA	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Glutathione metabolism	map00480
		Thyroid hormone synthesis	map04918

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004602	molecular_function	glutathione peroxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.563
	SRR3591706	second leaf	38.916
	SRR3591707	mature leaf	47.047
	SRR3591708	Shoot apex	56.609
	SRR3591709	Stem	61.300
	SRR3591710	White floral bud	26.041
	SRR3591711	White flower	35.289
	SRR3591712	Green floral bud	26.030
	SRR3591713	Yellow flower	27.628
SRP173429	SRR8316895	Juvenile bud stage	18.106
	SRR8316896	Juvenile bud stage	25.744
	SRR8316897	Juvenile bud stage	15.304
	SRR8316894	Third green stage	9.955
	SRR8316900	Third green stage	24.518
	SRR8316901	Third green stage	21.325
	SRR8316898	Complete white stage	7.504
	SRR8316899	Complete white stage	32.230
	SRR8316903	Complete white stage	12.030
	SRR8316902	Silver flowering stage	6.317
	SRR8316904	Silver flowering stage	9.936
	SRR8316905	Silver flowering stage	4.657
	SRR8316906	Gold flowering stage	12.483
	SRR8316907	Gold flowering stage	16.197
	SRR8316908	Gold flowering stage	21.133
SRP132670	SRR6706286	Control	10.743
	SRR6706287	Light intensity 50%	10.599
	SRR6706288	Light intensity 20%	11.734
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.991
	CNS0095593	Slightly white alabastrum(diploid) 2	30.222
	CNS0095594	Slightly white alabastrum(diploid) 3	24.560
	CNS0095595	Whole white alabastrum(diploid) 2	24.277
	CNS0095596	Whole white alabastrum(diploid) 3	20.889
	CNS0095597	Whole white alabastrum(diploid) 4	21.487
	CNS0095598	Silvery flower (diploied) 1	43.868
	CNS0095599	Silvery flower (diploied) 2	32.606
	CNS0095600	Silvery flower (diploied) 3	26.364
	CNS0095601	Golden flower (diploid) 1	39.572
	CNS0095602	Golden flower (diploid) 2	34.625
	CNS0095603	Golden flower (diploid) 3	35.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.770
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.452
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.436
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.798
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.222
	CNS0095610	Silvery flower (tetraploid) 1	15.901
	CNS0095611	Silvery flower (tetraploid) 2	27.069
	CNS0095612	Silvery flower (tetraploid) 3	14.596
	CNS0095613	Golden flower (tetraploid) 1	19.824
	CNS0095614	Golden flower (tetraploid) 2	17.041
	CNS0095615	Golden flower (tetraploid) 3	12.408
CRA001975	CRR073297	Stem 1	15.174
	CRR073298	Stem 2	15.032
	CRR073299	Stem 3	12.001
	CRR073300	Leaf 1	14.035
	CRR073301	Leaf 2	12.229
	CRR073302	Leaf 3	12.941
	CRR073303	Juvenile bud 1	9.803
	CRR073304	Juvenile bud 2	11.264
	CRR073305	Juvenile bud 3	10.430
	CRR073306	Third green 1	4.297
	CRR073307	Third green 2	4.920
	CRR073308	Third green 3	3.312
	CRR073309	Second white 1	4.727
	CRR073310	Second white 2	4.377
	CRR073311	Second white 3	2.996
	CRR073312	Silver flowering 1	2.731
	CRR073313	Silver flowering 2	2.274
	CRR073314	Silver flowering 3	2.101
	CRR073315	Gold flowering 1	19.702
	CRR073316	Gold flowering 2	31.530
	CRR073317	Gold flowering 3	21.679
	CRR073318	Tawny withering 1	13.696
	CRR073319	Tawny withering 2	23.583
	CRR073320	Tawny withering 3	14.955