Detail information of GWHGAAZE000231


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004247155.10PREDICTED: probable F-box protein At1g60180 [Solanum lycopersicum]
Swissprottr|Q9XIN8|FB119_ARATH1E-29F-box protein At2g27310
trEMBLtr|B9GSQ1|B9GSQ1_POPTR0Uncharacterized protein {ECO:0000313|EMBL:EEE81393.1}
TAIR10AT2G27310.12E-22F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene46190414620822+
GWHAAZE00000001mRNA46190414620822+
GWHAAZE00000001exon46190414620101+
GWHAAZE00000001exon46207324620822+
GWHAAZE00000001CDS46190414620101+
GWHAAZE00000001CDS46207324620807+
GWHAAZE00000001three_prime_UTR46208084620822+
Transcript Sequence

Network for GWHGAAZE000231

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.716
SRR3591706second leaf8.263
SRR3591707mature leaf6.748
SRR3591708Shoot apex15.498
SRR3591709Stem21.350
SRR3591710White floral bud9.989
SRR3591711White flower11.026
SRR3591712Green floral bud11.715
SRR3591713Yellow flower9.814
SRP173429 SRR8316895Juvenile bud stage 6.491
SRR8316896Juvenile bud stage 8.569
SRR8316897Juvenile bud stage 2.421
SRR8316894Third green stage 4.720
SRR8316900Third green stage 14.217
SRR8316901Third green stage 12.674
SRR8316898Complete white stage 6.013
SRR8316899Complete white stage 14.356
SRR8316903Complete white stage 9.745
SRR8316902Silver flowering stage5.477
SRR8316904Silver flowering stage5.672
SRR8316905Silver flowering stage3.377
SRR8316906Gold flowering stage 12.320
SRR8316907Gold flowering stage 9.877
SRR8316908Gold flowering stage 9.604
SRP132670SRR6706286Control11.259
SRR6706287Light intensity 50%10.818
SRR6706288Light intensity 20%10.701
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.033
CNS0095593Slightly white alabastrum(diploid) 211.838
CNS0095594Slightly white alabastrum(diploid) 312.275
CNS0095595Whole white alabastrum(diploid) 29.384
CNS0095596Whole white alabastrum(diploid) 311.499
CNS0095597Whole white alabastrum(diploid) 49.518
CNS0095598Silvery flower (diploied) 16.902
CNS0095599Silvery flower (diploied) 26.985
CNS0095600Silvery flower (diploied) 313.372
CNS0095601Golden flower (diploid) 19.987
CNS0095602Golden flower (diploid) 213.637
CNS0095603Golden flower (diploid) 313.034
CNS0095604Slightly white alabastrum(tetraploid) 110.911
CNS0095605Slightly white alabastrum(tetraploid) 210.919
CNS0095606Slightly white alabastrum(tetraploid) 38.347
CNS0095607Whole white alabastrum(tetraploid) 110.970
CNS0095608Whole white alabastrum(tetraploid) 28.864
CNS0095609Whole white alabastrum(tetraploid) 311.124
CNS0095610Silvery flower (tetraploid) 113.569
CNS0095611Silvery flower (tetraploid) 218.923
CNS0095612Silvery flower (tetraploid) 39.680
CNS0095613Golden flower (tetraploid) 17.674
CNS0095614Golden flower (tetraploid) 213.674
CNS0095615Golden flower (tetraploid) 315.593
CRA001975CRR073297Stem 115.300
CRR073298Stem 212.382
CRR073299Stem 314.939
CRR073300Leaf 110.690
CRR073301Leaf 215.641
CRR073302Leaf 310.346
CRR073303Juvenile bud 113.899
CRR073304Juvenile bud 210.349
CRR073305Juvenile bud 311.894
CRR073306Third green 17.098
CRR073307Third green 27.188
CRR073308Third green 36.171
CRR073309Second white 14.404
CRR073310Second white 24.479
CRR073311Second white 32.305
CRR073312Silver flowering 12.953
CRR073313Silver flowering 22.364
CRR073314Silver flowering 31.613
CRR073315Gold flowering 16.480
CRR073316Gold flowering 26.830
CRR073317Gold flowering 35.519
CRR073318Tawny withering 113.031
CRR073319Tawny withering 211.177
CRR073320Tawny withering 314.990