Gene detail

Detail information of GWHGAAZE000239

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03637.1	5.0594E-126	unnamed protein product [Coffea canephora]
COG	YP_004781726.1	1E-22	ribosomal-protein-alanine acetyltransferase
trEMBL	tr\|A0A068U5S3\|A0A068U5S3_COFCA	2E-126	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03637.1}
TAIR10	AT1G03150.1	6E-98	Acyl-CoA N-acyltransferases (NAT) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4697715	4701176	-
GWHAAZE00000001	mRNA	4697715	4701176	-
GWHAAZE00000001	exon	4701099	4701176	-
GWHAAZE00000001	exon	4700922	4701012	-
GWHAAZE00000001	exon	4700345	4700477	-
GWHAAZE00000001	exon	4698606	4698675	-
GWHAAZE00000001	exon	4697891	4697951	-
GWHAAZE00000001	exon	4697715	4697806	-
GWHAAZE00000001	CDS	4701099	4701176	-
GWHAAZE00000001	CDS	4700922	4701012	-
GWHAAZE00000001	CDS	4700345	4700477	-
GWHAAZE00000001	CDS	4698606	4698675	-
GWHAAZE00000001	CDS	4697891	4697951	-
GWHAAZE00000001	CDS	4697715	4697806	-

Transcript Sequence
>GWHTAAZE000239 ATGACGACAATTCGAAGATTTTGCTGCAACGATCTTCTTCGATTCGCATCTGTTAACCTTGATCATCTCACTGAAACCTTCAATATGTCATTCTACATGACCTACTTGGCTCGTTGGCCCGACTATTTCCATGTTGCCGAAGCTCCTGGCAATCGAATTATGGGATACATTATGGGAAAAGTTGAAGGTCAAGGCGAGTCCTGGCATGGTCATGTCACTGCAGTGACTGTAGCACCCGAGTACCGCAGGCAACAATTGGCCAAGAAACTGATGAATCTGCTTGAAGATATCAGTGACAAGATTGACAAGGCTTACTTTGTTGACCTCTTTGTGCGAGCTTCAAACACACCGGCAATAAAAATGTATGAGAAGCTCGATTATGTAATCTACAGACGTGTGCTCCGGTATTATTCTGGGGAGGAAGACGGGTTAGATATGAGAAAAGCGTTATCTCGGGATGTGGAGAAGAAGTCTATCATACCTCTCAAGAGGCCTGTTACTCCCGATGAACTGGAGTATGATTGA

Network for GWHGAAZE000239

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00583.26	Acetyltransf_1	38	127	4.40E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GNAT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008080	molecular_function	N-acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.987
	SRR3591706	second leaf	24.979
	SRR3591707	mature leaf	21.670
	SRR3591708	Shoot apex	39.936
	SRR3591709	Stem	29.917
	SRR3591710	White floral bud	28.615
	SRR3591711	White flower	35.959
	SRR3591712	Green floral bud	35.111
	SRR3591713	Yellow flower	45.803
SRP173429	SRR8316895	Juvenile bud stage	32.800
	SRR8316896	Juvenile bud stage	42.242
	SRR8316897	Juvenile bud stage	24.391
	SRR8316894	Third green stage	12.468
	SRR8316900	Third green stage	37.373
	SRR8316901	Third green stage	38.361
	SRR8316898	Complete white stage	11.426
	SRR8316899	Complete white stage	41.872
	SRR8316903	Complete white stage	16.674
	SRR8316902	Silver flowering stage	12.476
	SRR8316904	Silver flowering stage	13.616
	SRR8316905	Silver flowering stage	7.489
	SRR8316906	Gold flowering stage	27.273
	SRR8316907	Gold flowering stage	29.480
	SRR8316908	Gold flowering stage	26.345
SRP132670	SRR6706286	Control	59.639
	SRR6706287	Light intensity 50%	57.641
	SRR6706288	Light intensity 20%	60.303
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.599
	CNS0095593	Slightly white alabastrum(diploid) 2	28.862
	CNS0095594	Slightly white alabastrum(diploid) 3	33.023
	CNS0095595	Whole white alabastrum(diploid) 2	26.378
	CNS0095596	Whole white alabastrum(diploid) 3	20.354
	CNS0095597	Whole white alabastrum(diploid) 4	17.402
	CNS0095598	Silvery flower (diploied) 1	23.588
	CNS0095599	Silvery flower (diploied) 2	42.119
	CNS0095600	Silvery flower (diploied) 3	32.740
	CNS0095601	Golden flower (diploid) 1	27.703
	CNS0095602	Golden flower (diploid) 2	32.133
	CNS0095603	Golden flower (diploid) 3	34.498
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.536
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.613
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.676
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.258
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.386
	CNS0095610	Silvery flower (tetraploid) 1	44.511
	CNS0095611	Silvery flower (tetraploid) 2	42.079
	CNS0095612	Silvery flower (tetraploid) 3	33.269
	CNS0095613	Golden flower (tetraploid) 1	29.139
	CNS0095614	Golden flower (tetraploid) 2	39.187
	CNS0095615	Golden flower (tetraploid) 3	24.413
CRA001975	CRR073297	Stem 1	31.066
	CRR073298	Stem 2	34.508
	CRR073299	Stem 3	37.594
	CRR073300	Leaf 1	31.944
	CRR073301	Leaf 2	34.577
	CRR073302	Leaf 3	45.115
	CRR073303	Juvenile bud 1	30.349
	CRR073304	Juvenile bud 2	31.572
	CRR073305	Juvenile bud 3	27.468
	CRR073306	Third green 1	14.590
	CRR073307	Third green 2	12.210
	CRR073308	Third green 3	12.303
	CRR073309	Second white 1	26.983
	CRR073310	Second white 2	24.571
	CRR073311	Second white 3	17.700
	CRR073312	Silver flowering 1	17.250
	CRR073313	Silver flowering 2	20.279
	CRR073314	Silver flowering 3	12.714
	CRR073315	Gold flowering 1	16.588
	CRR073316	Gold flowering 2	22.598
	CRR073317	Gold flowering 3	14.297
	CRR073318	Tawny withering 1	30.313
	CRR073319	Tawny withering 2	36.678
	CRR073320	Tawny withering 3	34.955