Gene detail

Detail information of GWHGAAZE000240

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002520729.1	0	conserved hypothetical protein [Ricinus communis]
Swissprot	tr\|Q0WRC9\|SKI17_ARATH	3E-59	F-box protein SKIP17
trEMBL	tr\|B9S410\|B9S410_RICCO	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF41691.1}
TAIR10	AT4G02740.1	5E-43	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4714249	4720758	+
GWHAAZE00000001	mRNA	4714249	4720758	+
GWHAAZE00000001	exon	4714249	4714611	+
GWHAAZE00000001	exon	4715495	4715670	+
GWHAAZE00000001	exon	4716533	4716727	+
GWHAAZE00000001	exon	4716821	4716931	+
GWHAAZE00000001	exon	4718595	4718680	+
GWHAAZE00000001	exon	4718769	4718890	+
GWHAAZE00000001	exon	4720236	4720300	+
GWHAAZE00000001	exon	4720378	4720452	+
GWHAAZE00000001	exon	4720554	4720758	+
GWHAAZE00000001	CDS	4714249	4714611	+
GWHAAZE00000001	CDS	4715495	4715670	+
GWHAAZE00000001	CDS	4716533	4716727	+
GWHAAZE00000001	CDS	4716821	4716931	+
GWHAAZE00000001	CDS	4718595	4718680	+
GWHAAZE00000001	CDS	4718769	4718890	+
GWHAAZE00000001	CDS	4720236	4720300	+
GWHAAZE00000001	CDS	4720378	4720452	+
GWHAAZE00000001	CDS	4720554	4720758	+

Transcript Sequence
>GWHTAAZE000240 ATGGATACCCTTCTCCTCTTTCAATGCCCTTCCATGGCCAAACGCCCCTGTTGCTCCTCCCCCCCGGACCTAAATTCTCCCACTCTAAACCCTAACCCTAGGATTATCAAACGCGACCAAATAGACATGGACTCTCTCTTGGAATCCTTCTTATCTCTCTCCGATTCATCCTCTCCTTCTCTTGACCTCTCATTCGACCGCCTTATTGAATCTAGGGCTTCCGATTCCGATCAACACGATATGATCGAGCGTGCTCTGAGGTTGGGATCTGTACTGCTTGAAGCTGGTAAGCGATCTGCTCGAAAGCGCGCTTCGTTGCAGAACGGTGTCCTTTGGCCTCTTCCTCCTGATCTTACCATCAAAGTTTTCTCTATGCTTGATACTCAAAGTGTATGTTACGCTGCAGCTACGTGTTCCTTATTTCGCAAGTGTGCTTCGGATCCCTTGTGCTATGCCAACATTGACCTGACAACAGAAGTCCCAAAAGTCAATAATGTGGTAGTATCTGCAATGATTCAACGAGCTGGAAAAGTGCTTCAGTCTCTTAAGCTTGGCATAGTGCCTGGCCCAACTGCATCACCTGGTTCTTGTCAACCATTACCTTACAGTATCAGAAACCCTGCAGATGCTTCAGGCTTTTCATGGAATGATAAGAGGTCTAGACAAGGGAAGGAGTCATCTATTCTTTCAAGATCTTGCTTGAGTTCTTTGGGTGGAGCTGGTGGTGCTCCAGGGACCCTTTTGAGAAGGTTGCACCTTTACAATATTGAAAGGATGGACAATGCAGCTTTTTCTTCAGCATTATCAACCTGCCCCTCTCTCCTTGATCTTGAAATTGTTGGCCTTCACGTTGAGTTGAGGCAGACTTTGGAGTCAGTGAGCAAACATTGTCATTTGATAGAGCGTCTGTTTTTTGAATCTTCAAAAACAGGTAGGGATGACAGTTTGAAATTGCCAACATGTAGCGATCTAGTCAACAATTGTCCTCATCTAACTTCTTTGGCACTAAGGGGATTTAAGCTACATGACTATAAAGCTCGTGTGCTTGTCAAGGACATATCAAACAGGGAAGGTTTAGCATCTGAAGGTGATTGGTACCGTAGATGTTTCAGCCCAAGTTTCATACCCGTAGAGCAATTGTTCGGGAACAGGCCGGACTTCTGCCTGCTGGCTGAGTTCCCTCCCGAAGGAAGTTACAACGATGGGAGTGATGGAAACAGTGATTTCAGTATGCCGTCAGAACTAAGCAGTCGTACATCTGATGAATCAACTTTTGTGAATTCTTCAGAGAGCAGCAGCTATAATAGTGACCAGGGCAGTGGCAACGAGGACACTAGGGATACCAGTTCGTTACTTTACGAAGAAAGTTCAGATGAGATCGAGTTTTTGGCTCTTTAA

Network for GWHGAAZE000240

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	114	156	1.30E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.893
	SRR3591706	second leaf	48.906
	SRR3591707	mature leaf	34.945
	SRR3591708	Shoot apex	49.323
	SRR3591709	Stem	40.200
	SRR3591710	White floral bud	28.572
	SRR3591711	White flower	25.034
	SRR3591712	Green floral bud	28.523
	SRR3591713	Yellow flower	22.777
SRP173429	SRR8316895	Juvenile bud stage	27.307
	SRR8316896	Juvenile bud stage	36.279
	SRR8316897	Juvenile bud stage	15.138
	SRR8316894	Third green stage	14.881
	SRR8316900	Third green stage	35.372
	SRR8316901	Third green stage	35.444
	SRR8316898	Complete white stage	12.865
	SRR8316899	Complete white stage	29.548
	SRR8316903	Complete white stage	27.665
	SRR8316902	Silver flowering stage	14.824
	SRR8316904	Silver flowering stage	18.509
	SRR8316905	Silver flowering stage	7.766
	SRR8316906	Gold flowering stage	22.648
	SRR8316907	Gold flowering stage	21.679
	SRR8316908	Gold flowering stage	21.583
SRP132670	SRR6706286	Control	22.975
	SRR6706287	Light intensity 50%	24.024
	SRR6706288	Light intensity 20%	26.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.191
	CNS0095593	Slightly white alabastrum(diploid) 2	27.731
	CNS0095594	Slightly white alabastrum(diploid) 3	21.854
	CNS0095595	Whole white alabastrum(diploid) 2	20.604
	CNS0095596	Whole white alabastrum(diploid) 3	19.675
	CNS0095597	Whole white alabastrum(diploid) 4	21.185
	CNS0095598	Silvery flower (diploied) 1	21.059
	CNS0095599	Silvery flower (diploied) 2	17.676
	CNS0095600	Silvery flower (diploied) 3	20.888
	CNS0095601	Golden flower (diploid) 1	16.224
	CNS0095602	Golden flower (diploid) 2	19.966
	CNS0095603	Golden flower (diploid) 3	19.705
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.664
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.388
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.904
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.048
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.452
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.757
	CNS0095610	Silvery flower (tetraploid) 1	22.884
	CNS0095611	Silvery flower (tetraploid) 2	19.809
	CNS0095612	Silvery flower (tetraploid) 3	18.536
	CNS0095613	Golden flower (tetraploid) 1	18.000
	CNS0095614	Golden flower (tetraploid) 2	23.677
	CNS0095615	Golden flower (tetraploid) 3	25.021
CRA001975	CRR073297	Stem 1	45.839
	CRR073298	Stem 2	40.119
	CRR073299	Stem 3	37.421
	CRR073300	Leaf 1	38.732
	CRR073301	Leaf 2	38.486
	CRR073302	Leaf 3	28.364
	CRR073303	Juvenile bud 1	28.348
	CRR073304	Juvenile bud 2	20.708
	CRR073305	Juvenile bud 3	28.556
	CRR073306	Third green 1	14.213
	CRR073307	Third green 2	11.445
	CRR073308	Third green 3	13.882
	CRR073309	Second white 1	8.799
	CRR073310	Second white 2	13.006
	CRR073311	Second white 3	13.231
	CRR073312	Silver flowering 1	14.471
	CRR073313	Silver flowering 2	11.557
	CRR073314	Silver flowering 3	9.397
	CRR073315	Gold flowering 1	17.774
	CRR073316	Gold flowering 2	25.063
	CRR073317	Gold flowering 3	15.223
	CRR073318	Tawny withering 1	26.578
	CRR073319	Tawny withering 2	31.642
	CRR073320	Tawny withering 3	28.003