Gene detail

Detail information of GWHGAAZE000242

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651976.1	0	PREDICTED: uncharacterized protein LOC100853644 isoform X1 [Vitis vinifera]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	0.000004	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|F6HI46\|F6HI46_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51892.1}
TAIR10	AT1G05380.2	3E-145	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4751286	4759294	+
GWHAAZE00000001	mRNA	4751286	4759294	+
GWHAAZE00000001	exon	4751286	4754108	+
GWHAAZE00000001	exon	4754625	4754662	+
GWHAAZE00000001	exon	4754750	4754760	+
GWHAAZE00000001	exon	4754856	4755028	+
GWHAAZE00000001	exon	4755171	4755253	+
GWHAAZE00000001	exon	4755319	4755352	+
GWHAAZE00000001	exon	4756460	4756698	+
GWHAAZE00000001	exon	4756809	4756895	+
GWHAAZE00000001	exon	4757701	4757800	+
GWHAAZE00000001	exon	4758617	4759294	+
GWHAAZE00000001	CDS	4751286	4754108	+
GWHAAZE00000001	CDS	4754625	4754662	+
GWHAAZE00000001	CDS	4754750	4754760	+
GWHAAZE00000001	CDS	4754856	4755028	+
GWHAAZE00000001	CDS	4755171	4755253	+
GWHAAZE00000001	CDS	4755319	4755352	+
GWHAAZE00000001	CDS	4756460	4756698	+
GWHAAZE00000001	CDS	4756809	4756895	+
GWHAAZE00000001	CDS	4757701	4757800	+
GWHAAZE00000001	CDS	4758617	4759294	+

Transcript Sequence
>GWHTAAZE000242 ATGAAGGAGGGTTTGAGATCCAGTACTTTGTTGAAGAGAGAGAAAGATGGTTATCAGGTTAGTACTGATGAAGTTAGCCATAATCTTGGTAAAGGCAGGCAAGGGAGAAGAAGAAAATATGCGGAGAGAGGAAATGAGAGTGATGATGCTGAAAATGTTGATTATAAGGAAAATATAGGGTTGGGTGTGATTAATAAGGATTTGGTTTCTGCTAGTGATTTAGTCGTTTTATCCCCAGAAAGTGAAATGGCCAATGTTGGTGTTCAAGTGGGAGAAAATGGTAGTGATGCTTATAAGGAGAAGATTGGGTTTCAGTTGATTTCTAATGATATGGATCCTGCGAATGATTCAGTTATTGTCTCCCCAGAAAGAGATGCTGAGGAGGGAAGTGGCACTGAGCATGCAGAGTGCAGCAACGATGCCGTTGTTGGTGTTGAAGTGGTTGTCAATACTAGCCTTGATACCGAGCCTGATGGCAACGCTGATATAGATAAAGAAAAGGAGAACGTGGAGAGTCTGAGAGAAGTTGATGGTGCAAACGGTTGTGTTGATAAGGGGAATATAGGATCACCTTCTATTTTGAATAATTTGGATCATGTTAATGCTTTTGTTTATCCTTCTCCAGACAAAAGCGTTGAGGATGGATGTGGGATCAAGAATGTAGAATGCAGCAGAAAAGTCGATGGTGGTGGTGTCAATGGCCACGGTGATGCCAATATTGATGATGGTTATGATGAAGATACTTGCAAGCACAGGAAACCCCAGCTGGAAATAGAAAGGGAAAAGGTTGAGAGTCCAAGGATAGGTGCTGATGTCACCCTTGAAGGTATTGAGGAGGATAGAGTGTCACCTTTGAGTTCTCATGGTCTTGATTTTGTTACACAACCAGCTGCTTCTATCCCAGAAAGAGAATTTGAGAGAAGTGAGTCACAACACAGAGAATGCAGCAAAGATGCTAATTCAGGTGGAGAATCGGCCAATGCTCATGTTGCTGATGCCATTTGTGATGCTGATAAAAACACAAATAAGCTTGGCAAAGGCCGGCGAGGAAGGAAAAGGAAAAAAGTGGAGGGCTCTGAATCCGGGGATTGTGAAGCTAAAAGAAAGAAGGTCGAGGATTGTAAGGTTATTGGAAGGGTCTTGCGGTCAAGGACAATGGCAACGAGTGATGGTGAGAAAGTGGTTGATGGCAGAATGAATGTGGGCATAGTGGTTGAGAAAAGGATGAAGGAAACTGACCAATCTGAGGAGAAAAGGGTTGATACAGAAATGGATGAAAACTTTCGACCTATTGACATGCAAAGAAATTTTTTTAAACGTCCTCGTGGAAGACCCCCCAAGGTGCAGGGGAAAAATGGGTCATCAGAGATGATCCTCAAGGAAAAGGGTGAAAGCTCTCAACCTATTGGCATGGGAAGGAAAAAAACTAAACGTCCTCGTGGAAGACCCCCCAAGGTACAAAGGGAAGCTGGGGCATCAGAGGTGATTTGCATGGAAAAGGGTGAAAGCTCTCAACCTATTGGCACGCGAAGGAAAAAGATTAAACGCCCTCGTGGAAGACCCCGCAAGGTGCATGGGCTAAATGGGGCATTGGAGGCGATTTGTGAGGACATGCCGAAGTTTAAAGGTTTTAAGGAAAGCAGCAATCTGCCAAATGCTGAAGGCAGCATTAAGGGTTCCAAGTTGCTAAGGAAAACCAGGGCATCTGAGGTGATCAGTGCTGAGAAGTTTTCTGAACAATCAAATGCTGGAGAAGACACTCGTAAGGTTTCTAATTCCGCAGAAGATGGTAGGCACCATAGTGGGAAAAAGAGAAAGCTCAATAAAGAAGGGGAAACAGGGCGCAGGGAAGAAAAGCAGTTAGTGAGAGAGCAAATAATTGGTATACTTAAGCAGGCAGGCTGGACCATTGAATTTAGACCTAGGCAAGGCAGAGAGTACCATGACGCAGTATACGTTGACTGTGAAGGAAGAGGTTACTGGTCTGTCACCTTGGCATACAGGAAGCTTAAACAGAGAGTTGAAGGTGGAGGTGCTGACAGTAGGTCACTTTCTGCATTTACCTCAATACCTGAGGAGACGCTCAGCAAACTATTCAGGGTGACAAAAATGAAGAAAAAGAAAAATAAGAAGGCAAAACTACATGACCATGGGAAAGATTCATCGAAGAATAAACCTACTGCAAATGGCAGAGGTGGTTCGAAGCACAAAGAAAGGCCGAAGTCCTTCTCTAGATTGGGTGATAAATCTTCTGGCACAAAAATGAAAGTTGACAAATCATCACATAAGGGAATGGCAAGTTTGAATATGGAAAAAAGACAAAGTAGAAAGCCATGTGCTCTGTTGGCTCGAAGATCTGAAAAGGGTTTGGATCCAGATATTGATGGGTTCGTGCCATATAATGGGAAGCACAGTCTTCTTTCTTGGATGATTGATTTAGGAACCATTCCGCCTGATGCGAAGGTGCAATATATGAACGACAAAAAGGAAAGCGTGATGCTTGAAGGAAGGATTACCAGGGATGGAATCCAGTGTAGCTGCTGTGATAATATCCTCTCAATTTCAGATTTTGAGTCTCATGCTGGAACTAAACTATGCCAATCACTTTATAATATATGTTTGGAATCTGGAATTTCTCTTATGCAATGCCTCGTAGATTCATGGAGTAAACAAGAGGCGTCTGATCGTATTGGTTTCCATTTGGTGAACATCGACGGTGAGGACTCCAGTGATGATACATGTAACATCTGTGGAGATGGTGGCGACTTGATCTGTTGTGACAGTTGCCCGTCAACATTTCATCAGAACTGCTTAAATATAGAATATTCTGATGCTGCCCTTGTAGATGCTGAAGTTTACAAGTGGACTGCAGATGGTTATTCATCTACTTTTCTATATTTCAGAGTTTCCCTTCCGGTCACTGGCAATGCGTATACTGTTTGTGCAAATTATGTGGGACAGTTCATGGGACCACCTCTGAAAGGGATGACAGTAACAAGACTAACGTATCTAAACTGCTTACATGCCATCTATGCGAGGGAAAATTTCACCAACTTTGCGTACATGGGAAGGATTCCACAAATGTTGCTTCCAGTTGTTCATCCTTCTGTGGGAAACAATGCCAAGAGTCTTGTGTTTGAAGATTATATTGACATTCAGTATCTCTATGAGCAACTACAGGTGCTTCTCGGGGTTAAACAAGAACTGGAAGAAGGATTTTCATGGACACTTCTTCAGCGTTCTGATGCTAACCAAGATTTATCTCTGAGTGATGCTCCACTGAAGGTTGAATCCAACTCCAAGTTAGCTGTTGCATTTTCTATTATGGATGAGTGTTTTCTGCCAATTGTTGACGAGAGAAGTGGGATCAATATGATTCATAATGTTGTCTTCAGCTGTGGGTCAAACTTTACTCGGCTGAATTACAGTGGCTTCTTCACAGCTATTCTAGAGAGGGGTGATGAGATTATCTCGGCAGCATCTATAAGGATCCATGGAAATCAGTTAGCAGAGATGCCATTCATCGGGACTCGCAATATTTATAGGCGTCAAGGGATGTGCCGTCGACTTCTAAATGCAATTGAATCAGCTCTTCGCTCTCTTGATGTTGAGAAACTGATCATACCTGCCATATCTGAACTTCTTCAAACATGGACATCGGTTTTTGGGTTCAAGTCCCTTGAAGAATCAAAGAGGCAAGAAATGAAGTGGATCAGTATGATAGTGTTTCCTGGTACAGATATGTTACAGAAACCTCTGTTAAAGAGTCGGATACATCATCATTCTGATGAAACTGTTGATTGTGAGCACAAGGCACAAGTTAAAAAAATTGAGTGTGTGATACATCATCATTCTGATGTAACTTTGGGTCATCCCCATACTAAAACGGATCTTGTGGATGCATTTCAAGTTTCTGATAAGAATCTCAAGTGCGAAGTTTTAAATGCTAATTCGCCATCTCAACAAGAGAGACAAGATATTGCAAATGGTGATGTTTTTGAGTGTCGTGATCCTGAAGTAGCAGCTTCAGTTGAGAGTAAGCAATTTCCTTTCTCTGAAGCCTCTGCTGATGCTAGTACTGCACCTAATTCCAAGGCTTATTTTACTGGAATTTGCAAGTCCATGGAATTACAATCTGGTACTGATAACAATGATATTCCAGGGGTAAAAGAATCTTCTTTGATTTGTCCTTTAGGGGTAACTCATGAAACTTTGCGGGAGGTGGGTTCATGTACACTGTTGAAGAATTGTAGTCCATCATGCTAG

Network for GWHGAAZE000242

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16135.6	TDBD	836	885	3.20E-18
PF00628.30	PHD	914	949	7.00E-07

Protein Sequence

>GWHPAAZE000242
MKEGLRSSTLLKREKDGYQVSTDEVSHNLGKGRQGRRRKYAERGNESDDAENVDYKENIGLGVINKDLVSASDLVVLSPESEMANVGVQVGENGSDAYKEKIGFQLISNDMDPANDSVIVSPERDAEEGSGTEHAECSNDAVVGVEVVVNTSLDTEPDGNADIDKEKENVESLREVDGANGCVDKGNIGSPSILNNLDHVNAFVYPSPDKSVEDGCGIKNVECSRKVDGGGVNGHGDANIDDGYDEDTCKHRKPQLEIEREKVESPRIGADVTLEGIEEDRVSPLSSHGLDFVTQPAASIPEREFERSESQHRECSKDANSGGESANAHVADAICDADKNTNKLGKGRRGRKRKKVEGSESGDCEAKRKKVEDCKVIGRVLRSRTMATSDGEKVVDGRMNVGIVVEKRMKETDQSEEKRVDTEMDENFRPIDMQRNFFKRPRGRPPKVQGKNGSSEMILKEKGESSQPIGMGRKKTKRPRGRPPKVQREAGASEVICMEKGESSQPIGTRRKKIKRPRGRPRKVHGLNGALEAICEDMPKFKGFKESSNLPNAEGSIKGSKLLRKTRASEVISAEKFSEQSNAGEDTRKVSNSAEDGRHHSGKKRKLNKEGETGRREEKQLVREQIIGILKQAGWTIEFRPRQGREYHDAVYVDCEGRGYWSVTLAYRKLKQRVEGGGADSRSLSAFTSIPEETLSKLFRVTKMKKKKNKKAKLHDHGKDSSKNKPTANGRGGSKHKERPKSFSRLGDKSSGTKMKVDKSSHKGMASLNMEKRQSRKPCALLARRSEKGLDPDIDGFVPYNGKHSLLSWMIDLGTIPPDAKVQYMNDKKESVMLEGRITRDGIQCSCCDNILSISDFESHAGTKLCQSLYNICLESGISLMQCLVDSWSKQEASDRIGFHLVNIDGEDSSDDTCNICGDGGDLICCDSCPSTFHQNCLNIEYSDAALVDAEVYKWTADGYSSTFLYFRVSLPVTGNAYTVCANYVGQFMGPPLKGMTVTRLTYLNCLHAIYARENFTNFAYMGRIPQMLLPVVHPSVGNNAKSLVFEDYIDIQYLYEQLQVLLGVKQELEEGFSWTLLQRSDANQDLSLSDAPLKVESNSKLAVAFSIMDECFLPIVDERSGINMIHNVVFSCGSNFTRLNYSGFFTAILERGDEIISAASIRIHGNQLAEMPFIGTRNIYRRQGMCRRLLNAIESALRSLDVEKLIIPAISELLQTWTSVFGFKSLEESKRQEMKWISMIVFPGTDMLQKPLLKSRIHHHSDETVDCEHKAQVKKIECVIHHHSDVTLGHPHTKTDLVDAFQVSDKNLKCEVLNANSPSQQERQDIANGDVFECRDPEVAASVESKQFPFSEASADASTAPNSKAYFTGICKSMELQSGTDNNDIPGVKESSLICPLGVTHETLREVGSCTLLKNCSPSC

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008080	molecular_function	N-acetyltransferase activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.406
	SRR3591706	second leaf	6.949
	SRR3591707	mature leaf	6.893
	SRR3591708	Shoot apex	11.593
	SRR3591709	Stem	10.303
	SRR3591710	White floral bud	11.964
	SRR3591711	White flower	10.532
	SRR3591712	Green floral bud	8.481
	SRR3591713	Yellow flower	6.984
SRP173429	SRR8316895	Juvenile bud stage	5.685
	SRR8316896	Juvenile bud stage	7.159
	SRR8316897	Juvenile bud stage	2.810
	SRR8316894	Third green stage	4.207
	SRR8316900	Third green stage	6.852
	SRR8316901	Third green stage	6.922
	SRR8316898	Complete white stage	2.403
	SRR8316899	Complete white stage	6.592
	SRR8316903	Complete white stage	6.797
	SRR8316902	Silver flowering stage	3.541
	SRR8316904	Silver flowering stage	7.482
	SRR8316905	Silver flowering stage	3.370
	SRR8316906	Gold flowering stage	7.733
	SRR8316907	Gold flowering stage	7.457
	SRR8316908	Gold flowering stage	8.784
SRP132670	SRR6706286	Control	5.950
	SRR6706287	Light intensity 50%	6.575
	SRR6706288	Light intensity 20%	6.258
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.248
	CNS0095593	Slightly white alabastrum(diploid) 2	3.084
	CNS0095594	Slightly white alabastrum(diploid) 3	4.415
	CNS0095595	Whole white alabastrum(diploid) 2	3.740
	CNS0095596	Whole white alabastrum(diploid) 3	2.879
	CNS0095597	Whole white alabastrum(diploid) 4	3.438
	CNS0095598	Silvery flower (diploied) 1	6.898
	CNS0095599	Silvery flower (diploied) 2	3.520
	CNS0095600	Silvery flower (diploied) 3	8.641
	CNS0095601	Golden flower (diploid) 1	5.042
	CNS0095602	Golden flower (diploid) 2	7.479
	CNS0095603	Golden flower (diploid) 3	7.419
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.436
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.204
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.026
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.827
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.866
	CNS0095610	Silvery flower (tetraploid) 1	8.138
	CNS0095611	Silvery flower (tetraploid) 2	8.060
	CNS0095612	Silvery flower (tetraploid) 3	12.037
	CNS0095613	Golden flower (tetraploid) 1	3.816
	CNS0095614	Golden flower (tetraploid) 2	7.383
	CNS0095615	Golden flower (tetraploid) 3	8.334
CRA001975	CRR073297	Stem 1	11.025
	CRR073298	Stem 2	9.301
	CRR073299	Stem 3	7.389
	CRR073300	Leaf 1	8.632
	CRR073301	Leaf 2	7.213
	CRR073302	Leaf 3	3.752
	CRR073303	Juvenile bud 1	3.844
	CRR073304	Juvenile bud 2	2.567
	CRR073305	Juvenile bud 3	5.625
	CRR073306	Third green 1	3.212
	CRR073307	Third green 2	1.628
	CRR073308	Third green 3	3.564
	CRR073309	Second white 1	2.274
	CRR073310	Second white 2	4.504
	CRR073311	Second white 3	5.261
	CRR073312	Silver flowering 1	3.355
	CRR073313	Silver flowering 2	3.380
	CRR073314	Silver flowering 3	1.958
	CRR073315	Gold flowering 1	1.531
	CRR073316	Gold flowering 2	3.977
	CRR073317	Gold flowering 3	1.288
	CRR073318	Tawny withering 1	5.389
	CRR073319	Tawny withering 2	3.715
	CRR073320	Tawny withering 3	5.574