Detail information of GWHGAAZE000248


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003632308.10PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Vitis vinifera]
COGYP_005066906.14E-17serine/threonine protein kinase with WD-40 repeats
Swissprottr|Q9AUR7|COPA2_ORYSJ0.000001Coatomer subunit alpha-2
trEMBLtr|D7TDY8|D7TDY8_VITVI0tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit {ECO:0000256|HAMAP-Rule:MF_03056}
TAIR10AT1G03110.19E-136Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene48768794881927-
GWHAAZE00000001mRNA48768794881927-
GWHAAZE00000001exon48817914881927-
GWHAAZE00000001exon48808714881035-
GWHAAZE00000001exon48798334880013-
GWHAAZE00000001exon48792934879349-
GWHAAZE00000001exon48791294879199-
GWHAAZE00000001exon48789034878981-
GWHAAZE00000001exon48787704878829-
GWHAAZE00000001exon48785434878669-
GWHAAZE00000001exon48783874878445-
GWHAAZE00000001exon48768794877459-
GWHAAZE00000001CDS48817914881927-
GWHAAZE00000001CDS48808714881035-
GWHAAZE00000001CDS48798334880013-
GWHAAZE00000001CDS48792934879349-
GWHAAZE00000001CDS48791294879199-
GWHAAZE00000001CDS48789034878981-
GWHAAZE00000001CDS48787704878829-
GWHAAZE00000001CDS48785434878669-
GWHAAZE00000001CDS48783874878445-
GWHAAZE00000001CDS48770644877459-
GWHAAZE00000001three_prime_UTR48768794877063-
Transcript Sequence

Network for GWHGAAZE000248

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4062910.034
PF00400.33WD401521810.004
PF00400.33WD401992359.60E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0036265biological_processRNA (guanine-N7)-methylation
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.225
SRR3591706second leaf13.408
SRR3591707mature leaf18.058
SRR3591708Shoot apex24.140
SRR3591709Stem12.098
SRR3591710White floral bud12.751
SRR3591711White flower15.455
SRR3591712Green floral bud20.907
SRR3591713Yellow flower9.696
SRP173429 SRR8316895Juvenile bud stage 11.302
SRR8316896Juvenile bud stage 16.968
SRR8316897Juvenile bud stage 8.372
SRR8316894Third green stage 5.738
SRR8316900Third green stage 20.900
SRR8316901Third green stage 21.256
SRR8316898Complete white stage 6.105
SRR8316899Complete white stage 25.125
SRR8316903Complete white stage 10.075
SRR8316902Silver flowering stage5.895
SRR8316904Silver flowering stage8.144
SRR8316905Silver flowering stage3.851
SRR8316906Gold flowering stage 13.356
SRR8316907Gold flowering stage 14.933
SRR8316908Gold flowering stage 14.902
SRP132670SRR6706286Control9.102
SRR6706287Light intensity 50%10.169
SRR6706288Light intensity 20%11.369
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.649
CNS0095593Slightly white alabastrum(diploid) 216.813
CNS0095594Slightly white alabastrum(diploid) 313.062
CNS0095595Whole white alabastrum(diploid) 213.136
CNS0095596Whole white alabastrum(diploid) 312.202
CNS0095597Whole white alabastrum(diploid) 49.918
CNS0095598Silvery flower (diploied) 116.484
CNS0095599Silvery flower (diploied) 215.260
CNS0095600Silvery flower (diploied) 315.505
CNS0095601Golden flower (diploid) 113.079
CNS0095602Golden flower (diploid) 213.084
CNS0095603Golden flower (diploid) 311.742
CNS0095604Slightly white alabastrum(tetraploid) 114.130
CNS0095605Slightly white alabastrum(tetraploid) 212.296
CNS0095606Slightly white alabastrum(tetraploid) 320.991
CNS0095607Whole white alabastrum(tetraploid) 18.223
CNS0095608Whole white alabastrum(tetraploid) 28.188
CNS0095609Whole white alabastrum(tetraploid) 314.314
CNS0095610Silvery flower (tetraploid) 111.332
CNS0095611Silvery flower (tetraploid) 210.867
CNS0095612Silvery flower (tetraploid) 310.069
CNS0095613Golden flower (tetraploid) 19.415
CNS0095614Golden flower (tetraploid) 28.827
CNS0095615Golden flower (tetraploid) 38.285
CRA001975CRR073297Stem 111.552
CRR073298Stem 210.782
CRR073299Stem 311.744
CRR073300Leaf 110.390
CRR073301Leaf 211.032
CRR073302Leaf 313.714
CRR073303Juvenile bud 112.564
CRR073304Juvenile bud 211.620
CRR073305Juvenile bud 312.587
CRR073306Third green 12.784
CRR073307Third green 22.853
CRR073308Third green 32.421
CRR073309Second white 13.351
CRR073310Second white 26.259
CRR073311Second white 34.816
CRR073312Silver flowering 15.110
CRR073313Silver flowering 24.548
CRR073314Silver flowering 34.845
CRR073315Gold flowering 113.576
CRR073316Gold flowering 219.011
CRR073317Gold flowering 311.850
CRR073318Tawny withering 18.112
CRR073319Tawny withering 210.305
CRR073320Tawny withering 39.958