Detail information of GWHGAAZE000249


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009772236.10PREDICTED: F-box/kelch-repeat protein SKIP30 isoform X1 [Nicotiana sylvestris]
COGYP_004617553.13E-13ring canal Kelch protein
Swissprottr|Q9M1W7|SKI30_ARATH0F-box/kelch-repeat protein SKIP30
trEMBLtr|A0A067JC94|A0A067JC94_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP21432.1}
TAIR10AT3G63220.11E-145Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene49017784902815+
GWHAAZE00000001mRNA49017784902815+
GWHAAZE00000001exon49017784902815+
GWHAAZE00000001CDS49017784902815+
Transcript Sequence

Network for GWHGAAZE000249

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01344.26Kelch_1921462.30E-08
PF01344.26Kelch_11491942.00E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.547
SRR3591706second leaf15.347
SRR3591707mature leaf16.222
SRR3591708Shoot apex16.800
SRR3591709Stem24.716
SRR3591710White floral bud21.708
SRR3591711White flower33.124
SRR3591712Green floral bud25.500
SRR3591713Yellow flower34.558
SRP173429 SRR8316895Juvenile bud stage 8.399
SRR8316896Juvenile bud stage 10.875
SRR8316897Juvenile bud stage 4.441
SRR8316894Third green stage 5.538
SRR8316900Third green stage 20.185
SRR8316901Third green stage 18.186
SRR8316898Complete white stage 9.195
SRR8316899Complete white stage 26.564
SRR8316903Complete white stage 13.782
SRR8316902Silver flowering stage13.747
SRR8316904Silver flowering stage13.124
SRR8316905Silver flowering stage6.595
SRR8316906Gold flowering stage 20.639
SRR8316907Gold flowering stage 27.875
SRR8316908Gold flowering stage 26.599
SRP132670SRR6706286Control22.110
SRR6706287Light intensity 50%23.177
SRR6706288Light intensity 20%25.213
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.721
CNS0095593Slightly white alabastrum(diploid) 221.133
CNS0095594Slightly white alabastrum(diploid) 317.675
CNS0095595Whole white alabastrum(diploid) 218.393
CNS0095596Whole white alabastrum(diploid) 320.677
CNS0095597Whole white alabastrum(diploid) 417.183
CNS0095598Silvery flower (diploied) 116.921
CNS0095599Silvery flower (diploied) 211.759
CNS0095600Silvery flower (diploied) 322.654
CNS0095601Golden flower (diploid) 112.209
CNS0095602Golden flower (diploid) 222.554
CNS0095603Golden flower (diploid) 322.995
CNS0095604Slightly white alabastrum(tetraploid) 123.524
CNS0095605Slightly white alabastrum(tetraploid) 222.258
CNS0095606Slightly white alabastrum(tetraploid) 320.569
CNS0095607Whole white alabastrum(tetraploid) 118.489
CNS0095608Whole white alabastrum(tetraploid) 218.767
CNS0095609Whole white alabastrum(tetraploid) 317.617
CNS0095610Silvery flower (tetraploid) 124.431
CNS0095611Silvery flower (tetraploid) 220.357
CNS0095612Silvery flower (tetraploid) 322.479
CNS0095613Golden flower (tetraploid) 122.641
CNS0095614Golden flower (tetraploid) 225.838
CNS0095615Golden flower (tetraploid) 325.342
CRA001975CRR073297Stem 119.024
CRR073298Stem 217.956
CRR073299Stem 323.205
CRR073300Leaf 122.881
CRR073301Leaf 221.798
CRR073302Leaf 317.901
CRR073303Juvenile bud 119.467
CRR073304Juvenile bud 219.461
CRR073305Juvenile bud 320.710
CRR073306Third green 119.086
CRR073307Third green 218.543
CRR073308Third green 316.595
CRR073309Second white 125.554
CRR073310Second white 223.660
CRR073311Second white 324.514
CRR073312Silver flowering 138.311
CRR073313Silver flowering 235.862
CRR073314Silver flowering 332.414
CRR073315Gold flowering 117.701
CRR073316Gold flowering 219.997
CRR073317Gold flowering 315.761
CRR073318Tawny withering 125.562
CRR073319Tawny withering 228.534
CRR073320Tawny withering 319.972