Gene detail

Detail information of GWHGAAZE000254

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002300825.1	6.3228E-150	hypothetical protein POPTR_0002s05080g [Populus trichocarpa]
COG	NP_341967.1	5E-39	O-sialoglycoprotein endopeptidase
trEMBL	tr\|B9GSK7\|B9GSK7_POPTR	2E-150	Uncharacterized protein {ECO:0000313\|EMBL:EEE80098.1}
TAIR10	AT5G26110.1	8E-110	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	4954581	4956381	-
GWHAAZE00000001	mRNA	4954581	4956381	-
GWHAAZE00000001	exon	4954581	4954618	-
GWHAAZE00000001	exon	4954726	4954798	-
GWHAAZE00000001	exon	4955037	4955150	-
GWHAAZE00000001	exon	4955509	4955787	-
GWHAAZE00000001	exon	4955877	4955990	-
GWHAAZE00000001	exon	4956319	4956381	-
GWHAAZE00000001	CDS	4956319	4956381	-
GWHAAZE00000001	CDS	4955877	4955990	-
GWHAAZE00000001	CDS	4955509	4955787	-
GWHAAZE00000001	CDS	4955037	4955150	-
GWHAAZE00000001	CDS	4954726	4954798	-
GWHAAZE00000001	CDS	4954581	4954618	-

Transcript Sequence
>GWHTAAZE000254 ATGGAGATAACTGCAGAGGGAAAAGAAAGCTCCTTAATTCTGCTGAAGCAAGGTGCCGAAGCTAGGGTTTTTGAATCACATTTTGTGGGAAGAAGGTCTGTTGTTAAGGAACGCTTTTCAAAAAAATACAGGCATCCGACTTTGGATGCAAAGCTCACTCTCAAACGCTTGAATGCGGAAGCCAGGTGCATGGCTAAGGCTAGGCGACTTGGAGTTTCGACTCCAGCGCTTTACGCTGTAGATCCACTGCTTCATACCCTAACGCTCGAGTATGTGGAGGGCCCGTCTGTTAAAGATGTATTCCTTGACTTTGGTTTACAGGGTGTTGTTGAAGAAAGGATGAACGATATTGCAATGCAAATTGGTAGTGCAATTGGAAAACTTCATGATGGCGGCCTTGTTCATGGTGATTTGACCACATCAAACATGTTAATCCGTAATGGCACTAATCAACTTGTACTCATCGATTTTGGCCTGAGCTTCACATCAGCCCTCCCAGAAGATAAAGCGGTTGATCTGTATGTACTTGAACGAGCATTGCTGTCGATGCATTCTTCCTGTGGAAATGTGATGGATCGGATACTTGCCGCGTATAGGAAATCCTCAAAGCAATGGTCATCCACATTGAATAAGCTAGCTCAAGTGAGACAAAGAGGTAGAAAGCGAACCATGATTGGATGA

Network for GWHGAAZE000254

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	52	161	2.40E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.816
	SRR3591706	second leaf	26.472
	SRR3591707	mature leaf	35.119
	SRR3591708	Shoot apex	40.415
	SRR3591709	Stem	30.273
	SRR3591710	White floral bud	25.040
	SRR3591711	White flower	41.361
	SRR3591712	Green floral bud	35.607
	SRR3591713	Yellow flower	39.190
SRP173429	SRR8316895	Juvenile bud stage	16.727
	SRR8316896	Juvenile bud stage	25.736
	SRR8316897	Juvenile bud stage	5.745
	SRR8316894	Third green stage	11.627
	SRR8316900	Third green stage	33.447
	SRR8316901	Third green stage	31.166
	SRR8316898	Complete white stage	7.429
	SRR8316899	Complete white stage	40.574
	SRR8316903	Complete white stage	17.646
	SRR8316902	Silver flowering stage	12.848
	SRR8316904	Silver flowering stage	15.901
	SRR8316905	Silver flowering stage	7.189
	SRR8316906	Gold flowering stage	26.985
	SRR8316907	Gold flowering stage	31.015
	SRR8316908	Gold flowering stage	21.478
SRP132670	SRR6706286	Control	22.404
	SRR6706287	Light intensity 50%	26.570
	SRR6706288	Light intensity 20%	30.605
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.914
	CNS0095593	Slightly white alabastrum(diploid) 2	36.197
	CNS0095594	Slightly white alabastrum(diploid) 3	31.351
	CNS0095595	Whole white alabastrum(diploid) 2	28.956
	CNS0095596	Whole white alabastrum(diploid) 3	29.856
	CNS0095597	Whole white alabastrum(diploid) 4	27.960
	CNS0095598	Silvery flower (diploied) 1	29.263
	CNS0095599	Silvery flower (diploied) 2	20.811
	CNS0095600	Silvery flower (diploied) 3	24.825
	CNS0095601	Golden flower (diploid) 1	22.250
	CNS0095602	Golden flower (diploid) 2	26.090
	CNS0095603	Golden flower (diploid) 3	26.391
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.080
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.218
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.560
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.150
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.829
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.728
	CNS0095610	Silvery flower (tetraploid) 1	49.526
	CNS0095611	Silvery flower (tetraploid) 2	37.987
	CNS0095612	Silvery flower (tetraploid) 3	39.029
	CNS0095613	Golden flower (tetraploid) 1	40.011
	CNS0095614	Golden flower (tetraploid) 2	42.988
	CNS0095615	Golden flower (tetraploid) 3	36.196
CRA001975	CRR073297	Stem 1	33.808
	CRR073298	Stem 2	30.352
	CRR073299	Stem 3	32.834
	CRR073300	Leaf 1	39.577
	CRR073301	Leaf 2	33.365
	CRR073302	Leaf 3	37.133
	CRR073303	Juvenile bud 1	37.297
	CRR073304	Juvenile bud 2	34.217
	CRR073305	Juvenile bud 3	17.854
	CRR073306	Third green 1	7.180
	CRR073307	Third green 2	9.001
	CRR073308	Third green 3	11.131
	CRR073309	Second white 1	21.535
	CRR073310	Second white 2	16.633
	CRR073311	Second white 3	17.486
	CRR073312	Silver flowering 1	16.585
	CRR073313	Silver flowering 2	21.387
	CRR073314	Silver flowering 3	16.380
	CRR073315	Gold flowering 1	58.114
	CRR073316	Gold flowering 2	63.129
	CRR073317	Gold flowering 3	43.230
	CRR073318	Tawny withering 1	27.530
	CRR073319	Tawny withering 2	34.068
	CRR073320	Tawny withering 3	31.272