Detail information of GWHGAAZE000283


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010646132.10PREDICTED: BEACH domain-containing protein lvsA [Vitis vinifera]
COGYP_007090090.10.0000002WD40 repeat, subgroup
trEMBLtr|M5VP29|M5VP29_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ02979.1}
TAIR10AT1G03060.10Beige/BEACH domain ;WD domain, G-beta repeat protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene55947175606473+
GWHAAZE00000001mRNA55947175606473+
GWHAAZE00000001exon55947175595443+
GWHAAZE00000001exon55958785595980+
GWHAAZE00000001exon55960685596698+
GWHAAZE00000001exon55968245597169+
GWHAAZE00000001exon55978915599232+
GWHAAZE00000001exon55993135599540+
GWHAAZE00000001exon55999725602953+
GWHAAZE00000001exon56034695603777+
GWHAAZE00000001exon56039115604217+
GWHAAZE00000001exon56044865604632+
GWHAAZE00000001exon56052925606473+
GWHAAZE00000001CDS55947175595443+
GWHAAZE00000001CDS55958785595980+
GWHAAZE00000001CDS55960685596698+
GWHAAZE00000001CDS55968245597169+
GWHAAZE00000001CDS55978915599232+
GWHAAZE00000001CDS55993135599540+
GWHAAZE00000001CDS55999725602953+
GWHAAZE00000001CDS56034695603777+
GWHAAZE00000001CDS56039115604217+
GWHAAZE00000001CDS56044865604632+
GWHAAZE00000001CDS56052925606473+
Transcript Sequence

Network for GWHGAAZE000283

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14844.7PH_BEACH205021117.10E-10
PF02138.19Beach214924289.80E-116
PF00400.33WD40251225410.013
PF00400.33WD40255925920.0055
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.949
SRR3591706second leaf8.066
SRR3591707mature leaf7.780
SRR3591708Shoot apex11.962
SRR3591709Stem18.468
SRR3591710White floral bud10.897
SRR3591711White flower13.425
SRR3591712Green floral bud12.706
SRR3591713Yellow flower8.109
SRP173429 SRR8316895Juvenile bud stage 7.072
SRR8316896Juvenile bud stage 9.069
SRR8316897Juvenile bud stage 5.268
SRR8316894Third green stage 5.115
SRR8316900Third green stage 10.821
SRR8316901Third green stage 10.071
SRR8316898Complete white stage 1.651
SRR8316899Complete white stage 7.582
SRR8316903Complete white stage 5.173
SRR8316902Silver flowering stage2.235
SRR8316904Silver flowering stage4.797
SRR8316905Silver flowering stage1.690
SRR8316906Gold flowering stage 6.440
SRR8316907Gold flowering stage 6.107
SRR8316908Gold flowering stage 5.629
SRP132670SRR6706286Control7.321
SRR6706287Light intensity 50%8.690
SRR6706288Light intensity 20%10.214
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.114
CNS0095593Slightly white alabastrum(diploid) 24.829
CNS0095594Slightly white alabastrum(diploid) 34.443
CNS0095595Whole white alabastrum(diploid) 24.828
CNS0095596Whole white alabastrum(diploid) 34.372
CNS0095597Whole white alabastrum(diploid) 45.178
CNS0095598Silvery flower (diploied) 17.355
CNS0095599Silvery flower (diploied) 26.039
CNS0095600Silvery flower (diploied) 311.277
CNS0095601Golden flower (diploid) 17.048
CNS0095602Golden flower (diploid) 213.403
CNS0095603Golden flower (diploid) 313.030
CNS0095604Slightly white alabastrum(tetraploid) 16.990
CNS0095605Slightly white alabastrum(tetraploid) 24.899
CNS0095606Slightly white alabastrum(tetraploid) 314.129
CNS0095607Whole white alabastrum(tetraploid) 14.775
CNS0095608Whole white alabastrum(tetraploid) 24.200
CNS0095609Whole white alabastrum(tetraploid) 39.314
CNS0095610Silvery flower (tetraploid) 18.939
CNS0095611Silvery flower (tetraploid) 29.654
CNS0095612Silvery flower (tetraploid) 38.343
CNS0095613Golden flower (tetraploid) 13.411
CNS0095614Golden flower (tetraploid) 26.473
CNS0095615Golden flower (tetraploid) 37.251
CRA001975CRR073297Stem 112.678
CRR073298Stem 210.179
CRR073299Stem 34.869
CRR073300Leaf 111.399
CRR073301Leaf 28.970
CRR073302Leaf 35.171
CRR073303Juvenile bud 15.357
CRR073304Juvenile bud 22.912
CRR073305Juvenile bud 38.874
CRR073306Third green 11.687
CRR073307Third green 20.908
CRR073308Third green 31.954
CRR073309Second white 11.158
CRR073310Second white 22.150
CRR073311Second white 32.721
CRR073312Silver flowering 11.997
CRR073313Silver flowering 21.573
CRR073314Silver flowering 31.806
CRR073315Gold flowering 12.103
CRR073316Gold flowering 25.277
CRR073317Gold flowering 32.081
CRR073318Tawny withering 17.607
CRR073319Tawny withering 26.597
CRR073320Tawny withering 35.276