Gene detail

Detail information of GWHGAAZE000305

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP03700.1	1.2338E-140	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q94AY3\|DRIP2_ARATH	2E-94	E3 ubiquitin protein ligase DRIP2
trEMBL	tr\|A0A068U597\|A0A068U597_COFCA	5E-141	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03700.1}
TAIR10	AT2G30580.1	5E-66	DREB2A-interacting protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6019678	6025159	+
GWHAAZE00000001	mRNA	6019678	6025159	+
GWHAAZE00000001	exon	6019678	6019792	+
GWHAAZE00000001	exon	6020966	6021065	+
GWHAAZE00000001	exon	6021936	6022275	+
GWHAAZE00000001	exon	6022386	6022822	+
GWHAAZE00000001	exon	6022906	6022956	+
GWHAAZE00000001	exon	6024117	6024219	+
GWHAAZE00000001	exon	6024786	6024803	+
GWHAAZE00000001	exon	6024897	6025159	+
GWHAAZE00000001	CDS	6019678	6019792	+
GWHAAZE00000001	CDS	6020966	6021065	+
GWHAAZE00000001	CDS	6021936	6022275	+
GWHAAZE00000001	CDS	6022386	6022822	+
GWHAAZE00000001	CDS	6022906	6022956	+
GWHAAZE00000001	CDS	6024117	6024219	+
GWHAAZE00000001	CDS	6024786	6024803	+
GWHAAZE00000001	CDS	6024897	6025076	+
GWHAAZE00000001	three_prime_UTR	6025077	6025159	+

Transcript Sequence
>GWHTAAZE000305 ATGGCTAATCAAGTTGTAAAAATAAGGAGCGCTGAGATTGCCTCATGCATGAAATGTCCACTATGCGATAGGTTATACAGAGAGGCTACTACTATTTCTGAATGTCTCCATACATTTTGCAAGAAATGCATTTATAAAAAGCTTTCAGATGATGAAGATGACTGTTGTCCCGTATGCAATACCTACTTAGGCTGCTCTCCATTGGAGAAGCTGAGGTCTGACCATAATAAGAAAGATTTAAGAGAGAAGGTATTTCCTTCAAAAAAAAGTCAGAGTGGGACATCTAAGGTTGAGCCACCTGCTGTTGAGACGCCCAAGGTGGAGCCGCCCGTGGTGGAGACGGCTGTGGTTGAGACCCCTGAAGTCTTACCGGCAAGAAGAAAGGAGAGGTCGCTCTCTTCATTGGTGGTCAGCACTCCCAGAGTGTCAACGAAGACCCCATTAACGGGGCGGAGATCAAAAGTTCCTACAAGAAAAACACCAGGAAAAGCTATCCAGAAGGATGACGAAGATTCCTCAGAAGATCATTCAGATAGCTCAAGCAATATAAGGCAGAATTCTTCCCCCGTTGAGCCTGATAAAGAAGTAGTGAAGAGTGTTGAGAAATGTGAAGGAAAAGAGGATCTATGGGATCCTTTGACTTGTTTAGTGGAAGCAGCAAATAGGAGCAAGTCCTCGAAGATTTCTCCAGATGGGTCCGCTGAAAAATCGGACCTTCAGAAGGGTGCCGCCAACAACGACAGGGCTGCCCCCAAAATGAAAGGGAAGGAGCATGGGCAGTCTTCTAAGGTTCAAGATGAGAAAAATGGCACTGAACCTGCCCCAGCGGAAACTTCAAACCCTCAAAAGTTACGAAGAAATCGAAGAAAAAAGTCAGCAGAAGCTTCTGAAGAATCAGCTGTTTCTCCTCAAAATGTAATGGATGGTTGTGCTGAAGTATTACGCGAAAGGAAAATACCAATGTGGCTCTCATTAATCGCTTATGAGGATCAGGATGGAAATGAGCCACTGGCACAGATAGCTCCTGCTTATATAAGGGTTAAGGATGCCGATATACCTGTTTCTTCTTTACAGAAGTACCTGATGATTAAACTAGGTCTTAAGAGTGCAGAGGAGGTAAGTGAAGCCATCTTTTTCTACTTAACAGCGCTTGCAGTAGAACCTGTCGAGATAAAATGCATGGGTCAGCCACTAATCCCCACATTACAACTGAATAGTCTACTCGAATTATGGCTGCAAACAGGTGCACCAACCGAGAAGGTGCCAGTACAAGTCGGCTCAACAGGAAAGGAATTCGTTATGGTACTTTCATATGGGCGCAAAGTTCCTCGCCGTGATCCATAATTTCCTTCCATCCTTTCTGTATTCTCCTTTCATAGTTAGAGTCGGTCGCCCTATGCCGTCCACGTGGCGCATACGTGGCAGGC

Network for GWHGAAZE000305

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13923.7	zf-C3HC4_2	18	59	4.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.193
	SRR3591706	second leaf	1.314
	SRR3591707	mature leaf	0.402
	SRR3591708	Shoot apex	2.242
	SRR3591709	Stem	0.342
	SRR3591710	White floral bud	1.586
	SRR3591711	White flower	1.442
	SRR3591712	Green floral bud	1.952
	SRR3591713	Yellow flower	1.270
SRP173429	SRR8316895	Juvenile bud stage	1.673
	SRR8316896	Juvenile bud stage	1.691
	SRR8316897	Juvenile bud stage	1.391
	SRR8316894	Third green stage	1.328
	SRR8316900	Third green stage	4.155
	SRR8316901	Third green stage	3.770
	SRR8316898	Complete white stage	1.710
	SRR8316899	Complete white stage	2.933
	SRR8316903	Complete white stage	2.236
	SRR8316902	Silver flowering stage	1.180
	SRR8316904	Silver flowering stage	2.126
	SRR8316905	Silver flowering stage	0.654
	SRR8316906	Gold flowering stage	3.121
	SRR8316907	Gold flowering stage	2.890
	SRR8316908	Gold flowering stage	1.546
SRP132670	SRR6706286	Control	2.211
	SRR6706287	Light intensity 50%	1.995
	SRR6706288	Light intensity 20%	2.053
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.757
	CNS0095593	Slightly white alabastrum(diploid) 2	4.443
	CNS0095594	Slightly white alabastrum(diploid) 3	3.553
	CNS0095595	Whole white alabastrum(diploid) 2	2.415
	CNS0095596	Whole white alabastrum(diploid) 3	2.402
	CNS0095597	Whole white alabastrum(diploid) 4	2.203
	CNS0095598	Silvery flower (diploied) 1	1.890
	CNS0095599	Silvery flower (diploied) 2	1.266
	CNS0095600	Silvery flower (diploied) 3	2.013
	CNS0095601	Golden flower (diploid) 1	1.248
	CNS0095602	Golden flower (diploid) 2	1.307
	CNS0095603	Golden flower (diploid) 3	1.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.896
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.605
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.700
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.349
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.649
	CNS0095610	Silvery flower (tetraploid) 1	1.226
	CNS0095611	Silvery flower (tetraploid) 2	1.226
	CNS0095612	Silvery flower (tetraploid) 3	2.281
	CNS0095613	Golden flower (tetraploid) 1	1.025
	CNS0095614	Golden flower (tetraploid) 2	1.952
	CNS0095615	Golden flower (tetraploid) 3	2.109
CRA001975	CRR073297	Stem 1	2.666
	CRR073298	Stem 2	2.647
	CRR073299	Stem 3	2.400
	CRR073300	Leaf 1	3.053
	CRR073301	Leaf 2	3.742
	CRR073302	Leaf 3	2.257
	CRR073303	Juvenile bud 1	2.018
	CRR073304	Juvenile bud 2	1.444
	CRR073305	Juvenile bud 3	2.895
	CRR073306	Third green 1	3.813
	CRR073307	Third green 2	1.967
	CRR073308	Third green 3	2.412
	CRR073309	Second white 1	4.466
	CRR073310	Second white 2	2.180
	CRR073311	Second white 3	2.004
	CRR073312	Silver flowering 1	2.341
	CRR073313	Silver flowering 2	4.471
	CRR073314	Silver flowering 3	2.830
	CRR073315	Gold flowering 1	0.953
	CRR073316	Gold flowering 2	1.440
	CRR073317	Gold flowering 3	0.914
	CRR073318	Tawny withering 1	0.640
	CRR073319	Tawny withering 2	2.328
	CRR073320	Tawny withering 3	0.971