Detail information of GWHGAAZE000311


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010274154.10PREDICTED: uncharacterized protein LOC104609525 [Nelumbo nucifera]
trEMBLtr|A5C4J5|A5C4J5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN83921.1}
TAIR10AT1G64260.15E-20MuDR family transposase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene60803726082708-
GWHAAZE00000001mRNA60803726082708-
GWHAAZE00000001exon60803726081302-
GWHAAZE00000001exon60816546082708-
GWHAAZE00000001CDS60816546082708-
GWHAAZE00000001CDS60803726081302-
Transcript Sequence

Network for GWHGAAZE000311

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03108.16DBD_Tnp_Mut2032677.10E-26
PF04434.18SWIM5115614.20E-07
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.461
SRR3591706second leaf6.879
SRR3591707mature leaf6.534
SRR3591708Shoot apex11.445
SRR3591709Stem7.242
SRR3591710White floral bud6.175
SRR3591711White flower7.471
SRR3591712Green floral bud6.866
SRR3591713Yellow flower8.767
SRP173429 SRR8316895Juvenile bud stage 7.530
SRR8316896Juvenile bud stage 8.354
SRR8316897Juvenile bud stage 3.614
SRR8316894Third green stage 3.318
SRR8316900Third green stage 7.471
SRR8316901Third green stage 7.594
SRR8316898Complete white stage 3.219
SRR8316899Complete white stage 11.064
SRR8316903Complete white stage 6.616
SRR8316902Silver flowering stage3.066
SRR8316904Silver flowering stage4.897
SRR8316905Silver flowering stage2.774
SRR8316906Gold flowering stage 9.415
SRR8316907Gold flowering stage 7.785
SRR8316908Gold flowering stage 8.060
SRP132670SRR6706286Control6.954
SRR6706287Light intensity 50%7.201
SRR6706288Light intensity 20%6.994
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.941
CNS0095593Slightly white alabastrum(diploid) 28.371
CNS0095594Slightly white alabastrum(diploid) 37.088
CNS0095595Whole white alabastrum(diploid) 25.357
CNS0095596Whole white alabastrum(diploid) 35.306
CNS0095597Whole white alabastrum(diploid) 46.118
CNS0095598Silvery flower (diploied) 18.201
CNS0095599Silvery flower (diploied) 28.319
CNS0095600Silvery flower (diploied) 311.084
CNS0095601Golden flower (diploid) 19.306
CNS0095602Golden flower (diploid) 212.364
CNS0095603Golden flower (diploid) 311.646
CNS0095604Slightly white alabastrum(tetraploid) 16.873
CNS0095605Slightly white alabastrum(tetraploid) 25.872
CNS0095606Slightly white alabastrum(tetraploid) 313.669
CNS0095607Whole white alabastrum(tetraploid) 14.146
CNS0095608Whole white alabastrum(tetraploid) 23.286
CNS0095609Whole white alabastrum(tetraploid) 37.357
CNS0095610Silvery flower (tetraploid) 17.390
CNS0095611Silvery flower (tetraploid) 29.310
CNS0095612Silvery flower (tetraploid) 310.171
CNS0095613Golden flower (tetraploid) 17.323
CNS0095614Golden flower (tetraploid) 29.350
CNS0095615Golden flower (tetraploid) 313.181
CRA001975CRR073297Stem 115.461
CRR073298Stem 212.809
CRR073299Stem 310.252
CRR073300Leaf 116.456
CRR073301Leaf 214.014
CRR073302Leaf 36.937
CRR073303Juvenile bud 16.789
CRR073304Juvenile bud 26.656
CRR073305Juvenile bud 310.769
CRR073306Third green 15.568
CRR073307Third green 23.872
CRR073308Third green 34.058
CRR073309Second white 17.520
CRR073310Second white 27.686
CRR073311Second white 37.631
CRR073312Silver flowering 110.108
CRR073313Silver flowering 212.553
CRR073314Silver flowering 39.773
CRR073315Gold flowering 17.548
CRR073316Gold flowering 211.190
CRR073317Gold flowering 311.296
CRR073318Tawny withering 111.160
CRR073319Tawny withering 28.623
CRR073320Tawny withering 39.206