Detail information of GWHGAAZE000325


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002263533.13.2709E-111PREDICTED: LOB domain-containing protein 29 [Vitis vinifera]
Swissprottr|Q9M2J7|LBD29_ARATH1E-69LOB domain-containing protein 29
trEMBLtr|D7U2X1|D7U2X1_VITVI1E-111Putative uncharacterized protein {ECO:0000313|EMBL:CBI37087.3}
TAIR10AT3G58190.13E-48lateral organ boundaries-domain 29

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene64269196427912-
GWHAAZE00000001mRNA64269196427912-
GWHAAZE00000001exon64276346427912-
GWHAAZE00000001exon64269196427341-
GWHAAZE00000001CDS64276346427912-
GWHAAZE00000001CDS64269196427341-
Transcript Sequence

Network for GWHGAAZE000325

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB71053.70E-36
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud1.144
SRR3591711White flower1.458
SRR3591712Green floral bud0.259
SRR3591713Yellow flower0.282
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.216
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.048
SRR8316900Third green stage 1.055
SRR8316901Third green stage 0.302
SRR8316898Complete white stage 0.920
SRR8316899Complete white stage 1.551
SRR8316903Complete white stage 0.970
SRR8316902Silver flowering stage0.244
SRR8316904Silver flowering stage0.182
SRR8316905Silver flowering stage0.107
SRR8316906Gold flowering stage 0.329
SRR8316907Gold flowering stage 0.308
SRR8316908Gold flowering stage 0.144
SRP132670SRR6706286Control0.362
SRR6706287Light intensity 50%0.558
SRR6706288Light intensity 20%0.378
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.559
CNS0095594Slightly white alabastrum(diploid) 30.079
CNS0095595Whole white alabastrum(diploid) 20.616
CNS0095596Whole white alabastrum(diploid) 30.161
CNS0095597Whole white alabastrum(diploid) 41.481
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.052
CNS0095600Silvery flower (diploied) 30.916
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.072
CNS0095604Slightly white alabastrum(tetraploid) 10.263
CNS0095605Slightly white alabastrum(tetraploid) 20.068
CNS0095606Slightly white alabastrum(tetraploid) 30.724
CNS0095607Whole white alabastrum(tetraploid) 11.706
CNS0095608Whole white alabastrum(tetraploid) 20.020
CNS0095609Whole white alabastrum(tetraploid) 30.217
CNS0095610Silvery flower (tetraploid) 10.167
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.073
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.111
CRR073298Stem 20.089
CRR073299Stem 30.000
CRR073300Leaf 10.410
CRR073301Leaf 20.065
CRR073302Leaf 30.089
CRR073303Juvenile bud 11.731
CRR073304Juvenile bud 20.754
CRR073305Juvenile bud 31.454
CRR073306Third green 10.292
CRR073307Third green 21.628
CRR073308Third green 30.614
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000