Gene detail

Detail information of GWHGAAZE000329

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010652362.1	PREDICTED: autophagy-related protein 9 [Vitis vinifera]
trEMBL	tr\|B9T2A0\|B9T2A0_RICCO	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF30012.1}
TAIR10	AT2G31260.1	autophagy 9 (APG9)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6507245	6513472	+
GWHAAZE00000001	mRNA	6507245	6513472	+
GWHAAZE00000001	exon	6507245	6507828	+
GWHAAZE00000001	exon	6508356	6508677	+
GWHAAZE00000001	exon	6509882	6510145	+
GWHAAZE00000001	exon	6511094	6511273	+
GWHAAZE00000001	exon	6511365	6511571	+
GWHAAZE00000001	exon	6511673	6511750	+
GWHAAZE00000001	exon	6511843	6511913	+
GWHAAZE00000001	exon	6512011	6512121	+
GWHAAZE00000001	exon	6512449	6513472	+
GWHAAZE00000001	CDS	6507245	6507828	+
GWHAAZE00000001	CDS	6508356	6508677	+
GWHAAZE00000001	CDS	6509882	6510145	+
GWHAAZE00000001	CDS	6511094	6511273	+
GWHAAZE00000001	CDS	6511365	6511571	+
GWHAAZE00000001	CDS	6511673	6511750	+
GWHAAZE00000001	CDS	6511843	6511913	+
GWHAAZE00000001	CDS	6512011	6512121	+
GWHAAZE00000001	CDS	6512449	6513472	+

Transcript Sequence
>GWHTAAZE000329 ATGATGTTCAGTGCACAAAAGCTTGCCAATGCTCTTGACAATTTAAAATGGAAACGGCGCAGTGAATCATCTCTGACAACGGGTTTGCTTAATAATGATGTGCATTATCATGAAATTGAATTGTCCGATTACCTCAGAGCACCGAGTCCAGGCAGTGAAAGCCCTTCTGGACTTCTTAATGGTGATAGCTTGAATGTGGACCCCATTGACGATTTGGATTTGTTCGTTGAGAGGCTTTACGGCTACTACTGTCAGAAAGGGCTATGGTGCATCATTATAAAGTGGATAGTTGAATTCTTGACTTTAGCTTTTACCATATGTTTCTCAGGTTTTTTCTTGTTGTTTGTTGATTGGAACGGTCTTCGCAATGCAAAGTGTGGAATGGATGCCGTTGAATCTGGAATCAAGCCCTGTGATCTGTCCAAGGAAGCCCTCCATAAGCATCCATTTACTCCTTTTACGCTTCATAAAGCTGTTATTGTTGGGTATTTGGGAATATTCTCTGGTTACACTATCTTCACTTTTTTAAGGTTTTTTGCACAATTGAAGTACACTCTCAAAATCCGCCAGTTCTATAACAACAGTCTTCATTTGACGGATAATGAAATACAAACAATGCCATGGGCGTTGGTTCTTGAAAAGGTCGTTCAGTCACAAAATTCACAACAATGGTGTGTAGTCAAGGATCTTTCTGCCCATGATATTGTAATGAGGCTGATGAGAAAAGAGAACTACTTGATTGGCATGCTCAACAAAGGGGTCCTTTCTTTTCCAATCCCACAGTGGGTTCCAGGTGCTGGGCCTGTCGTCAAGTTTGGCTCGAGCGGGGCTCAATACCGCCTAATGCTGACCAAGACCCTTTATGTGATCGTTTCGTTCATATCGGTGCTCATGTTTGACAGGTTTAGTGTTGCTATCCTTTTTCTGATTCCAAAAATATTCTGCAGAAAGTTTTGCGTTCGGAGTGGCTTTGTTTCTGATCCTAAAGCATTAAAGAAATTGATTGTGGTAATTGGACTTGTAATGCTTCTACTCTCTCCATGTCTGGTCGTATTCATGCTGGTATATCTTTTCTTGAGACATGCGGAACAGTTCTACAATCACCCAAGCACTGCATCATCTCGAAGATGGTCAAATCTCTCAAAGTGGATATTTAGGGAATTTAATGAGGTTGACCATTTATTCCAGCACAGGATGAACAGCAGTTTAGAACCCGCTTCTGAATATCTAAAGCAGTTCCCATCTCCTATTTTATCCATCATTGCAAAGTTCATTTCCTTTGTTTCTGGTGGCTTTGCTGCTATTTTGATCATCATTGCCTTCCTAGAGGAGTCTCTGCTCGAAGGCCATATATTTGGTCGAAATTTGTTTTGGTATGCTGCTGTTTTTGGAACAATAACCGCTATTAGCAGGGCTGCTGTAACGGATGAGCTTCTAGTCCTTGATCCACGAGGGGCAATGTCTATGGTTATCCAACATACACACTATATGCCCAAGAGATGGCGTGGTAAAGAAAATACTGATGTGGTTAGAATGGAATTCGAAACTCTATTTCAGTATACTGGAATGATGCTACTAGAAGAGATGGCCTCTATTTTTCTCACTCCATTCCTACTTGTATTTGTGGCCCCAAAGCGGGTGGATGACATTTTGCAGTTTATTTCTGATTTCACGGTGGATATTGAGGGTGTTGGTAATGTTTGCAGCTTTAGTGCCTTTGATTTCCAAAAACATGGCAACAGCAATTATGGTTCACCGTGTAACCTACCTCGCATCAAGAGGAGTTCCCAGGGCAAAATGGAGAAATCATTCTTGAGCTTTCAAAATAACTATCCTTCATGGGAACCAAATGCACAGGGGAAGCAATTCCTCTCAACAATCGAAACATTTAGGGAGCAAAAAATGCAACGCCAGGTAACAACTGGACCTGCACATTCTCCCTCTAGAATACAGCAATGGACTCTGAACCCAAGGCAACATGGTGACCGAAATAACTTCTTTGTGCGAGAAAAGCCTCGAATTATTGGAGATCCATCAGGTTCCATGTGGCCTACTGATTCTGAAGACAAGAATTATCCCTATATTCTTGACTGGTATTATACATCTGGGCCCCACCATGCAACCAATAATTCAATAAACGCTCCACCCGAGAATATTGACATTCCCAAGGAAAGCCCACGATTATGGGTCCCGCCGTCCGACAGCAGACAAAACAACGAAAATTGGTCTCATCTGTCTGAGGATCGATCAAGGAGCCAAGAAGCTTCTACATCAGTTCCTTTGTACCATGCAAGTGTACTAGAGCATTACGACTCTGGTAATGTTGTGGGTAACACGAGTACGAGCCGGTGGTATGACCGAGCGCGAGAAGGTGCGGGCCCACAGGGAAGCTTTATCAACCCTCCGAATTTCAACCAGAACAATGATAATTATCATGATAATTTATCGGAGGGAAGCATGGATGAACAAGAACAATACTTGGGGTTGTTGAGGAGCAATCACAGTAGGTTGAGAAGCTTTGTCAACCCTCTGAATTTCAACCAAAACAATGATAATTTGTCAGAGAGAAGCATGGACGAACATGAACAATACTTGGGGATGTCGAGGAGCAATCACAGTCGTAGGCAGAGAAGCTCTATCAGCCCTCCAAATTTCAACCAGAATGATGATTATCACGATAATTTACTGGAGAGGAGCATGGATGAACAAGAACAATACTTGGAGTTGTTGAGGAGCAATCACAGCCGTAGGTTGTCCCTGACCACCTACATGGATGATTTGGATGTAGGAGGAGAAGTCGATCTTCCTTTCGGTGATATTTACAGTAAAGATACAGGTTAA

Network for GWHGAAZE000329

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04109.17	APG9	67	574	5.60E-153

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17907	ATG9	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Mitophagy - animal	map04137

Gene Ontology

GO term	Ontology	Name
GO:0006914	biological_process	autophagy

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.390
	SRR3591706	second leaf	9.118
	SRR3591707	mature leaf	9.939
	SRR3591708	Shoot apex	10.252
	SRR3591709	Stem	19.748
	SRR3591710	White floral bud	18.793
	SRR3591711	White flower	26.602
	SRR3591712	Green floral bud	15.536
	SRR3591713	Yellow flower	22.891
SRP173429	SRR8316895	Juvenile bud stage	7.068
	SRR8316896	Juvenile bud stage	9.344
	SRR8316897	Juvenile bud stage	4.109
	SRR8316894	Third green stage	4.310
	SRR8316900	Third green stage	10.559
	SRR8316901	Third green stage	11.054
	SRR8316898	Complete white stage	5.806
	SRR8316899	Complete white stage	15.053
	SRR8316903	Complete white stage	11.443
	SRR8316902	Silver flowering stage	8.790
	SRR8316904	Silver flowering stage	13.603
	SRR8316905	Silver flowering stage	5.440
	SRR8316906	Gold flowering stage	20.995
	SRR8316907	Gold flowering stage	17.550
	SRR8316908	Gold flowering stage	17.967
SRP132670	SRR6706286	Control	8.344
	SRR6706287	Light intensity 50%	8.758
	SRR6706288	Light intensity 20%	8.697
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.534
	CNS0095593	Slightly white alabastrum(diploid) 2	6.176
	CNS0095594	Slightly white alabastrum(diploid) 3	7.901
	CNS0095595	Whole white alabastrum(diploid) 2	5.649
	CNS0095596	Whole white alabastrum(diploid) 3	5.015
	CNS0095597	Whole white alabastrum(diploid) 4	6.667
	CNS0095598	Silvery flower (diploied) 1	8.201
	CNS0095599	Silvery flower (diploied) 2	9.021
	CNS0095600	Silvery flower (diploied) 3	18.441
	CNS0095601	Golden flower (diploid) 1	6.582
	CNS0095602	Golden flower (diploid) 2	16.926
	CNS0095603	Golden flower (diploid) 3	16.470
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.172
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.161
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.557
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.138
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.853
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.607
	CNS0095610	Silvery flower (tetraploid) 1	17.341
	CNS0095611	Silvery flower (tetraploid) 2	14.625
	CNS0095612	Silvery flower (tetraploid) 3	17.465
	CNS0095613	Golden flower (tetraploid) 1	10.049
	CNS0095614	Golden flower (tetraploid) 2	13.438
	CNS0095615	Golden flower (tetraploid) 3	23.726
CRA001975	CRR073297	Stem 1	12.188
	CRR073298	Stem 2	11.484
	CRR073299	Stem 3	7.810
	CRR073300	Leaf 1	10.382
	CRR073301	Leaf 2	11.151
	CRR073302	Leaf 3	6.146
	CRR073303	Juvenile bud 1	6.569
	CRR073304	Juvenile bud 2	6.168
	CRR073305	Juvenile bud 3	8.332
	CRR073306	Third green 1	5.925
	CRR073307	Third green 2	4.952
	CRR073308	Third green 3	6.458
	CRR073309	Second white 1	8.185
	CRR073310	Second white 2	11.208
	CRR073311	Second white 3	11.972
	CRR073312	Silver flowering 1	13.213
	CRR073313	Silver flowering 2	10.210
	CRR073314	Silver flowering 3	10.549
	CRR073315	Gold flowering 1	5.317
	CRR073316	Gold flowering 2	8.467
	CRR073317	Gold flowering 3	3.990
	CRR073318	Tawny withering 1	7.794
	CRR073319	Tawny withering 2	6.378
	CRR073320	Tawny withering 3	7.665