Gene detail

Detail information of GWHGAAZE000342

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010262320.1	3.32121E-93	PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	8E-71	Myb-related protein Myb4
trEMBL	tr\|B9GS15\|B9GS15_POPTR	1E-92	GmMYB29 family protein {ECO:0000313\|EMBL:EEE81318.1}
TAIR10	AT3G23250.1	1E-60	myb domain protein 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6655097	6656163	+
GWHAAZE00000001	mRNA	6655097	6656163	+
GWHAAZE00000001	exon	6655097	6655229	+
GWHAAZE00000001	exon	6655349	6655478	+
GWHAAZE00000001	exon	6655695	6656163	+
GWHAAZE00000001	CDS	6655097	6655229	+
GWHAAZE00000001	CDS	6655349	6655478	+
GWHAAZE00000001	CDS	6655695	6656163	+

Transcript Sequence
>GWHTAAZE000342 ATGGTAAGAGCTCCATGCTGTGAGAAGATGGGGTTGAAGAAAGGTCCATGGACACCCAAAGAAGATCATATTCTCGTCGATTATATTCGTCACTATGGCCATGGCAATTGGCGCGCTCTTCCTAAACAAGCCGGTTTACTGAGATGCGGAAAGAGTTGCAGGCTTAGGTGGACGAATTATCTTCGACCCGATATTAAGAGAGGAAATTTTAGCCGGGAAGAAGAAGACACCATTATAAAGCTTCACGGAGCATTAGGAAACAGATGGTCAGCTATTGCAGCAAGATTACCGGGACGAACAGATAATGAAATAAAGAATGTGTGGAACACCCACTTGAGAAAGAGAGTAGTCAATCAAATCCCTTCCACTATTTCTTCGACGGAATTCTACAACTCTGCTGATCATCAAGAAACCAATTTTGAACAATTCAAAGAAGAAGATTCAAAGCAAATGACTGTCCAAAGGAAAAATCCCCCACAGAAATCCTCTAGTGAAATCTCTTCTGTCACTACTAACAACAATTTCCCGGCAGTGGATGAGATTTTCTGGTCGGAGGTATTTTCTGGTGAAAACTCCGGCATGGGAAGTTATTTCCCGGGGGACCCACAACTTCAAATTCCACTGTCTCAACTTTATGGCTATGATTCCAACGTGCAAGATGGCAGCATGGACTACTGGTATGACTTATTGAAGAGAGGCGGTGGGGAAATACCAGAATTGGTTGAGTTTTAA

Network for GWHGAAZE000342

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	3.40E-14
PF00249.32	Myb_DNA-binding	67	112	3.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.114
	SRR3591707	mature leaf	0.114
	SRR3591708	Shoot apex	0.459
	SRR3591709	Stem	0.458
	SRR3591710	White floral bud	2.007
	SRR3591711	White flower	2.973
	SRR3591712	Green floral bud	1.355
	SRR3591713	Yellow flower	1.116
SRP173429	SRR8316895	Juvenile bud stage	0.178
	SRR8316896	Juvenile bud stage	0.246
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	1.285
	SRR8316900	Third green stage	8.718
	SRR8316901	Third green stage	10.803
	SRR8316898	Complete white stage	0.446
	SRR8316899	Complete white stage	9.516
	SRR8316903	Complete white stage	0.943
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.188
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.218
	SRR8316907	Gold flowering stage	0.366
	SRR8316908	Gold flowering stage	0.136
SRP132670	SRR6706286	Control	6.797
	SRR6706287	Light intensity 50%	6.286
	SRR6706288	Light intensity 20%	6.759
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.127
	CNS0095593	Slightly white alabastrum(diploid) 2	4.941
	CNS0095594	Slightly white alabastrum(diploid) 3	1.353
	CNS0095595	Whole white alabastrum(diploid) 2	3.154
	CNS0095596	Whole white alabastrum(diploid) 3	5.660
	CNS0095597	Whole white alabastrum(diploid) 4	2.389
	CNS0095598	Silvery flower (diploied) 1	2.512
	CNS0095599	Silvery flower (diploied) 2	0.749
	CNS0095600	Silvery flower (diploied) 3	0.486
	CNS0095601	Golden flower (diploid) 1	0.760
	CNS0095602	Golden flower (diploid) 2	1.003
	CNS0095603	Golden flower (diploid) 3	0.957
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.637
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.233
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.048
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.206
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.344
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.621
	CNS0095610	Silvery flower (tetraploid) 1	0.102
	CNS0095611	Silvery flower (tetraploid) 2	0.412
	CNS0095612	Silvery flower (tetraploid) 3	0.208
	CNS0095613	Golden flower (tetraploid) 1	0.100
	CNS0095614	Golden flower (tetraploid) 2	1.027
	CNS0095615	Golden flower (tetraploid) 3	0.402
CRA001975	CRR073297	Stem 1	0.187
	CRR073298	Stem 2	1.211
	CRR073299	Stem 3	0.055
	CRR073300	Leaf 1	5.922
	CRR073301	Leaf 2	5.473
	CRR073302	Leaf 3	2.268
	CRR073303	Juvenile bud 1	2.190
	CRR073304	Juvenile bud 2	1.206
	CRR073305	Juvenile bud 3	3.063
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.030
	CRR073313	Silver flowering 2	0.070
	CRR073314	Silver flowering 3	1.481
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.716
	CRR073319	Tawny withering 2	2.539
	CRR073320	Tawny withering 3	0.584