Detail information of GWHGAAZE000352


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010652379.10PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Vitis vinifera]
Swissprottr|C0SUT9|JMJ16_ARATH0Putative lysine-specific demethylase JMJ16
trEMBLtr|V7BGG9|V7BGG9_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW15958.1}
TAIR10AT1G08620.21E-161Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene67910616795165-
GWHAAZE00000001mRNA67910616795165-
GWHAAZE00000001exon67910616791370-
GWHAAZE00000001exon67914426791578-
GWHAAZE00000001exon67920106792378-
GWHAAZE00000001exon67926816792839-
GWHAAZE00000001exon67933366793560-
GWHAAZE00000001exon67936506794150-
GWHAAZE00000001exon67942556794332-
GWHAAZE00000001exon67944716794542-
GWHAAZE00000001exon67948636795165-
GWHAAZE00000001CDS67948636795165-
GWHAAZE00000001CDS67944716794542-
GWHAAZE00000001CDS67942556794332-
GWHAAZE00000001CDS67936506794150-
GWHAAZE00000001CDS67933366793560-
GWHAAZE00000001CDS67926816792839-
GWHAAZE00000001CDS67920106792378-
GWHAAZE00000001CDS67914426791578-
GWHAAZE00000001CDS67910616791370-
Transcript Sequence

Network for GWHGAAZE000352

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02375.18JmjN1441772.50E-16
PF02373.23JmjC3824963.00E-35
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.312
SRR3591706second leaf14.163
SRR3591707mature leaf24.232
SRR3591708Shoot apex24.242
SRR3591709Stem35.410
SRR3591710White floral bud29.087
SRR3591711White flower30.255
SRR3591712Green floral bud25.201
SRR3591713Yellow flower28.388
SRP173429 SRR8316895Juvenile bud stage 12.935
SRR8316896Juvenile bud stage 17.351
SRR8316897Juvenile bud stage 7.029
SRR8316894Third green stage 7.899
SRR8316900Third green stage 19.738
SRR8316901Third green stage 17.259
SRR8316898Complete white stage 9.422
SRR8316899Complete white stage 34.623
SRR8316903Complete white stage 15.898
SRR8316902Silver flowering stage10.418
SRR8316904Silver flowering stage14.232
SRR8316905Silver flowering stage6.859
SRR8316906Gold flowering stage 20.614
SRR8316907Gold flowering stage 19.261
SRR8316908Gold flowering stage 20.688
SRP132670SRR6706286Control15.908
SRR6706287Light intensity 50%16.385
SRR6706288Light intensity 20%16.702
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.702
CNS0095593Slightly white alabastrum(diploid) 29.339
CNS0095594Slightly white alabastrum(diploid) 310.535
CNS0095595Whole white alabastrum(diploid) 211.599
CNS0095596Whole white alabastrum(diploid) 39.617
CNS0095597Whole white alabastrum(diploid) 410.280
CNS0095598Silvery flower (diploied) 118.006
CNS0095599Silvery flower (diploied) 214.036
CNS0095600Silvery flower (diploied) 324.657
CNS0095601Golden flower (diploid) 111.791
CNS0095602Golden flower (diploid) 225.722
CNS0095603Golden flower (diploid) 324.176
CNS0095604Slightly white alabastrum(tetraploid) 113.344
CNS0095605Slightly white alabastrum(tetraploid) 210.406
CNS0095606Slightly white alabastrum(tetraploid) 320.378
CNS0095607Whole white alabastrum(tetraploid) 110.361
CNS0095608Whole white alabastrum(tetraploid) 29.856
CNS0095609Whole white alabastrum(tetraploid) 316.325
CNS0095610Silvery flower (tetraploid) 124.175
CNS0095611Silvery flower (tetraploid) 226.285
CNS0095612Silvery flower (tetraploid) 322.811
CNS0095613Golden flower (tetraploid) 115.185
CNS0095614Golden flower (tetraploid) 220.455
CNS0095615Golden flower (tetraploid) 328.907
CRA001975CRR073297Stem 116.965
CRR073298Stem 213.598
CRR073299Stem 313.631
CRR073300Leaf 116.375
CRR073301Leaf 212.571
CRR073302Leaf 39.987
CRR073303Juvenile bud 110.374
CRR073304Juvenile bud 210.023
CRR073305Juvenile bud 316.182
CRR073306Third green 18.089
CRR073307Third green 27.182
CRR073308Third green 36.695
CRR073309Second white 19.340
CRR073310Second white 29.929
CRR073311Second white 39.712
CRR073312Silver flowering 18.398
CRR073313Silver flowering 210.748
CRR073314Silver flowering 38.501
CRR073315Gold flowering 114.569
CRR073316Gold flowering 223.557
CRR073317Gold flowering 314.103
CRR073318Tawny withering 113.960
CRR073319Tawny withering 210.328
CRR073320Tawny withering 310.013