Gene detail

Detail information of GWHGAAZE000354

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006360664.1	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Solanum tuberosum]
Swissprot	tr\|Q93Z16\|RPN2_ARATH	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (Precursor)
trEMBL	tr\|M5VIH1\|M5VIH1_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00919.1}
TAIR10	AT4G21150.3	ribophorin II (RPN2) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6847459	6866460	-
GWHAAZE00000001	mRNA	6847459	6866460	-
GWHAAZE00000001	exon	6847459	6847852	-
GWHAAZE00000001	exon	6850088	6850287	-
GWHAAZE00000001	exon	6851968	6852045	-
GWHAAZE00000001	exon	6853006	6853077	-
GWHAAZE00000001	exon	6853630	6853749	-
GWHAAZE00000001	exon	6854004	6854096	-
GWHAAZE00000001	exon	6854378	6854458	-
GWHAAZE00000001	exon	6859540	6859662	-
GWHAAZE00000001	exon	6859910	6860134	-
GWHAAZE00000001	exon	6860223	6860303	-
GWHAAZE00000001	exon	6860770	6860853	-
GWHAAZE00000001	exon	6860937	6861048	-
GWHAAZE00000001	exon	6861551	6861699	-
GWHAAZE00000001	exon	6861828	6861914	-
GWHAAZE00000001	exon	6862099	6862200	-
GWHAAZE00000001	exon	6863170	6863239	-
GWHAAZE00000001	exon	6863339	6863379	-
GWHAAZE00000001	exon	6863507	6863650	-
GWHAAZE00000001	exon	6863745	6863854	-
GWHAAZE00000001	exon	6864841	6864895	-
GWHAAZE00000001	exon	6865266	6865330	-
GWHAAZE00000001	exon	6865462	6865528	-
GWHAAZE00000001	exon	6865631	6865717	-
GWHAAZE00000001	exon	6866039	6866128	-
GWHAAZE00000001	exon	6866239	6866460	-
GWHAAZE00000001	CDS	6866239	6866460	-
GWHAAZE00000001	CDS	6866039	6866128	-
GWHAAZE00000001	CDS	6865631	6865717	-
GWHAAZE00000001	CDS	6865462	6865528	-
GWHAAZE00000001	CDS	6865266	6865330	-
GWHAAZE00000001	CDS	6864841	6864895	-
GWHAAZE00000001	CDS	6863745	6863854	-
GWHAAZE00000001	CDS	6863507	6863650	-
GWHAAZE00000001	CDS	6863339	6863379	-
GWHAAZE00000001	CDS	6863170	6863239	-
GWHAAZE00000001	CDS	6862099	6862200	-
GWHAAZE00000001	CDS	6861828	6861914	-
GWHAAZE00000001	CDS	6861551	6861699	-
GWHAAZE00000001	CDS	6860937	6861048	-
GWHAAZE00000001	CDS	6860770	6860853	-
GWHAAZE00000001	CDS	6860223	6860303	-
GWHAAZE00000001	CDS	6859910	6860134	-
GWHAAZE00000001	CDS	6859540	6859662	-
GWHAAZE00000001	CDS	6854378	6854458	-
GWHAAZE00000001	CDS	6854004	6854096	-
GWHAAZE00000001	CDS	6853630	6853749	-
GWHAAZE00000001	CDS	6853006	6853077	-
GWHAAZE00000001	CDS	6851968	6852045	-
GWHAAZE00000001	CDS	6850096	6850287	-
GWHAAZE00000001	three_prime_UTR	6850088	6850095	-
GWHAAZE00000001	three_prime_UTR	6847459	6847852	-

Transcript Sequence
>GWHTAAZE000354 ATGTCTGATTTGAGGTTATCTATTTCCAGCTTAGAGGAAACATATGAGGCTTTGAGAACATTTAAGATTCTTGGAATTGAAAAACATGATGATGTAAAGGCTTCTACTTGCAAATCTGTGGAGGAGATTCTCTGGTCACCATCTTCAAACCTAAAGGATCTGTTGTATGCGTTGAGAGTTAACGGGCTACTAAAATGTGAGCTCGGTGAAGAAGTTTTGACGGGCATTGCTTCAAGACTTAAAGACTCTATCAAGGATGCAAGCTCATTGCTTGACTTCTACCACTCAATAGGAAGTTTGGTGTCTATTAAGGACCAAACTTCTCAAGTTGATGTACTTCTTGGAGATGCTGACGGTGTTTTTGAATCAGTAAAGGTTGGTATCTACCTTTATGGCATTGCTCTAAGCCAAAGTGATGGAAGGTGGAAGTATAGTAAAAATTCTGAATCTAGTGCTTATGCTGCGGGCATAGCACTTGAGACTCTTGGTGGAGTTGTTTCATTAACATCTTCTGAGATTGATCAAAACCGCATTGGAACACTGAAAAATGATATAGTGAAGCTCTTTGACAGTATTGAGAAATATGATGATGGGGCCTACTACTTTGATGAGAAAGATCAGGGCCCTCTTTCAGCAACGTCGTCAGTAGTACATGGGCTTATAGTTTTTGCAACTGCCACTTCCGGAAGTTTGAATCTCCCTGGGGACAAAATATTGGGTTTGGCAAAGTTTTTCCTTGGCATTGGAGTTCCTGGCAACTCCAAAGATTTGTATTACCAGATCGATGCATTAGCTTATTTGGAAAGCAATAGGCAAGTGATTACAAATCGTGTTCCCCTGAATATTGTTGCCTTTGGTGCTTTGGGCTTTTCTTTCAAAGGGATTGCCATTCCACTGATTTTATCACTTCCAGCTACTGTGGTTTCTTTGACTAGAGAAGACAATCTAAAGGTTAAGGTGAACACTGTGCTGGGACATACTGCACCTCCTCTATCAGTAAAACTCATGCATATTATTGGCTCTGGTTCCAAGGATGCGCCCTTAATTGGCCAGGAACTGGAGTTTGACTCTGAAAATGCCCTCCATATCTTGGATTTGCCAAAGAGCGTTGATGTTGGAGCCTATAACTTTGTTTTTGAGATTGTTCTTCATGATCCAGAGCATAAGAAAACTTATGCTACTGGAGGCCGAACAAAAGTGCAAGTATATGTCACAGGAATTGTCAAGGTTGACAGTGCAGAAATTGCAGTACTTGACCGTGATCTTGGGAGCGTAGAATCTCAGAAAAAGCTAGATTTAGCTGGAGAGAATGATCTTGCCTTATCAGCGAATCACCTTCAAAAGCTGCGGTTGTCCTTCCAGTTGTCCACTCCTCTTGGTCATGCTTTCAAGCCTCACCAGGCATTCCTCAAGTTGAGACACGAGACCAAAGTTGAGCATATCTTTGTTGTGGGAAACTCTGGGAAGCAGTATGAAATAATATTAGATTTTCTCGGGCTGGTTGAGAAATTTTTCTATCTCTCTGGTAGATATGACATTCAACTTACAGTGGGAGATTCTGTCATGGAGAATTCTTTCATACAATCTATGGGCCATGTGGAACTAGATTTGCCTGAACCATCCGAGAAGGCAACCAAGCCTCCTCCACAAGCCGTTGATCAGTACTTGAGATATGGCCCCATGGATGAGATAACCCACATCTTTAGGGCTCCGGAGAAGCGGCCTCCTCAAGAACTCTCTCTCGCTTTCTTGGGCCTTGTTCTCTTACCCTTCATTGGATTCTTGGTTGGGCTATTACGTCTAGGTGTGAACCTGAAGAACTTCCCTACATCAACAGTGCCTGCGTTGTTTGCTGCCCTCTTCCACCTTGGCATTGCGGCTGTTCTCTTATTATATGTGCTTTTCTGGTTGAAGGTTTCAGTTGAGCCTTTTATTTTGCGATCACAACTGTACAGCAGTGTAAAAGACAGGACTCAAGTGGACAGGGAATTAGAGTCTCTGAATAGGGAGAGAGTTTTGCGCATTTTCAAATTAAATACTGGGCAAGATGATCACGCCATCATGTTTGTGGAGGACTATTTGAATCAGATTGAACGTGTTGTGAAAAGGTTTGAGGCAAAGAAGCAAGATGATCTTGCAGTTTTTGGGTGGTTTAAAATGCACATTATCCATTCAAAGCTGGATACCAGTATTGGACATGAAGAGCTTTGTGCACTTCTATCATTGGGTGGAAAGGTGAAAGATGAACACATCTCTCTCTTAATTAATGCTGGTCTTCTTACGCGCCAACTTATCGATCAAACGATGTACTGGTTTGCAATTCCAAATATTGGTGCCGTACTCAAGGGCCTTTCACAGGGAAGAAAAGAGCTTCTATCTTTTCTCAACCGGAGGAAATACAAGGAGATGATGTTGGCTCCTTTAGAGAAGAAGCGGCTCCGACTTTCTGTGCTGGACATGAGATTTCATCTTCGAGATCTCATAGGTTCAGGGCACCTAAAATCCGTACAGACTCCTAGTGGAATAGTCATTCGGGTTGCAAAAGATTAAAACCTCATGTAATTTTCTCCATGGTTTAAGTGCTAATTTTCAATCAAAGGGGATTGCGAGTAAAAAGTTGTCTATTGTGAGTCTTGCTCAGAAGGAAAAGAAAGAAGTATGGGACCTACAAATCGCTTGTCGAGGATTTCTGTTAATAATCTGGACCTCGATCTATTTGATTTGAATAATAAAAAATGCTGTCAATATTACCAAAGTGGACTGTATATTTGCGTGTGAGAAAGTGAAAGCTCCTCTTGTCTTTTATTTAATTGATTGATATTAGATTTGCCATATCATTGAGTTAATATATTTAATGAAATATTTGTGCACGGACTGTAGATGGGAATTCGGTTGATAATGAACTTTGTCCAATATGTCTTTCATTTTGAAGTTGATGTGCTATCCTTTTAA

Network for GWHGAAZE000354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05817.15	Ribophorin_II	7	639	5.00E-155
PF10494.10	Stk19	640	846	2.00E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12667	SWP1, RPN2	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006487	biological_process	protein N-linked glycosylation
GO:0008250	cellular_component	oligosaccharyltransferase complex
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	96.847
	SRR3591706	second leaf	49.477
	SRR3591707	mature leaf	36.206
	SRR3591708	Shoot apex	65.567
	SRR3591709	Stem	65.875
	SRR3591710	White floral bud	72.659
	SRR3591711	White flower	73.169
	SRR3591712	Green floral bud	85.967
	SRR3591713	Yellow flower	57.725
SRP173429	SRR8316895	Juvenile bud stage	62.284
	SRR8316896	Juvenile bud stage	79.508
	SRR8316897	Juvenile bud stage	41.323
	SRR8316894	Third green stage	32.827
	SRR8316900	Third green stage	95.716
	SRR8316901	Third green stage	84.614
	SRR8316898	Complete white stage	32.798
	SRR8316899	Complete white stage	93.701
	SRR8316903	Complete white stage	57.673
	SRR8316902	Silver flowering stage	30.398
	SRR8316904	Silver flowering stage	41.095
	SRR8316905	Silver flowering stage	17.304
	SRR8316906	Gold flowering stage	58.051
	SRR8316907	Gold flowering stage	57.721
	SRR8316908	Gold flowering stage	71.457
SRP132670	SRR6706286	Control	51.477
	SRR6706287	Light intensity 50%	55.367
	SRR6706288	Light intensity 20%	61.207
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.167
	CNS0095593	Slightly white alabastrum(diploid) 2	56.203
	CNS0095594	Slightly white alabastrum(diploid) 3	54.451
	CNS0095595	Whole white alabastrum(diploid) 2	52.021
	CNS0095596	Whole white alabastrum(diploid) 3	55.549
	CNS0095597	Whole white alabastrum(diploid) 4	44.515
	CNS0095598	Silvery flower (diploied) 1	37.214
	CNS0095599	Silvery flower (diploied) 2	38.603
	CNS0095600	Silvery flower (diploied) 3	67.578
	CNS0095601	Golden flower (diploid) 1	31.618
	CNS0095602	Golden flower (diploid) 2	65.402
	CNS0095603	Golden flower (diploid) 3	61.936
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.424
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.621
	CNS0095606	Slightly white alabastrum(tetraploid) 3	96.435
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.413
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.182
	CNS0095609	Whole white alabastrum(tetraploid) 3	72.284
	CNS0095610	Silvery flower (tetraploid) 1	58.984
	CNS0095611	Silvery flower (tetraploid) 2	49.901
	CNS0095612	Silvery flower (tetraploid) 3	47.896
	CNS0095613	Golden flower (tetraploid) 1	24.296
	CNS0095614	Golden flower (tetraploid) 2	46.926
	CNS0095615	Golden flower (tetraploid) 3	37.060
CRA001975	CRR073297	Stem 1	88.797
	CRR073298	Stem 2	80.820
	CRR073299	Stem 3	92.535
	CRR073300	Leaf 1	93.946
	CRR073301	Leaf 2	90.511
	CRR073302	Leaf 3	98.413
	CRR073303	Juvenile bud 1	99.306
	CRR073304	Juvenile bud 2	79.426
	CRR073305	Juvenile bud 3	106.471
	CRR073306	Third green 1	28.742
	CRR073307	Third green 2	26.583
	CRR073308	Third green 3	30.137
	CRR073309	Second white 1	40.366
	CRR073310	Second white 2	29.295
	CRR073311	Second white 3	35.058
	CRR073312	Silver flowering 1	36.372
	CRR073313	Silver flowering 2	37.056
	CRR073314	Silver flowering 3	34.869
	CRR073315	Gold flowering 1	33.819
	CRR073316	Gold flowering 2	50.207
	CRR073317	Gold flowering 3	46.565
	CRR073318	Tawny withering 1	87.540
	CRR073319	Tawny withering 2	75.567
	CRR073320	Tawny withering 3	86.363