Detail information of GWHGAAZE000356


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011083038.10PREDICTED: protein CHROMATIN REMODELING 8 [Sesamum indicum]
COGYP_003955642.19E-77snf2/helicase domain-containing protein
Swissprottr|Q9ZV43|CHR8_ARATH0Protein CHROMATIN REMODELING 8 {ECO:0000303|PubMed:16547115}
trEMBLtr|F6HZL7|F6HZL7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB60132.1}
TAIR10AT2G18760.10chromatin remodeling 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene68948256900628-
GWHAAZE00000001mRNA68948256900628-
GWHAAZE00000001exon68948256895511-
GWHAAZE00000001exon68959876896460-
GWHAAZE00000001exon68967676897376-
GWHAAZE00000001exon68980856898949-
GWHAAZE00000001exon68991536899558-
GWHAAZE00000001exon68998726900408-
GWHAAZE00000001exon69005366900628-
GWHAAZE00000001CDS69005366900628-
GWHAAZE00000001CDS68998726900408-
GWHAAZE00000001CDS68991536899558-
GWHAAZE00000001CDS68980856898949-
GWHAAZE00000001CDS68967676897376-
GWHAAZE00000001CDS68959876896460-
GWHAAZE00000001CDS68948256895511-
Transcript Sequence

Network for GWHGAAZE000356

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.24SNF2_N4007143.90E-62
PF00271.32Helicase_C7368468.40E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
K10841ERCC6, CSB, RAD26 Nucleotide excision repair map03420

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.932
SRR3591706second leaf4.958
SRR3591707mature leaf8.346
SRR3591708Shoot apex5.723
SRR3591709Stem11.998
SRR3591710White floral bud11.193
SRR3591711White flower15.621
SRR3591712Green floral bud10.469
SRR3591713Yellow flower14.091
SRP173429 SRR8316895Juvenile bud stage 7.208
SRR8316896Juvenile bud stage 8.826
SRR8316897Juvenile bud stage 4.470
SRR8316894Third green stage 4.528
SRR8316900Third green stage 10.226
SRR8316901Third green stage 9.899
SRR8316898Complete white stage 6.616
SRR8316899Complete white stage 14.120
SRR8316903Complete white stage 12.458
SRR8316902Silver flowering stage6.203
SRR8316904Silver flowering stage12.804
SRR8316905Silver flowering stage5.307
SRR8316906Gold flowering stage 16.137
SRR8316907Gold flowering stage 15.595
SRR8316908Gold flowering stage 18.560
SRP132670SRR6706286Control8.529
SRR6706287Light intensity 50%9.148
SRR6706288Light intensity 20%9.033
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.625
CNS0095593Slightly white alabastrum(diploid) 25.407
CNS0095594Slightly white alabastrum(diploid) 34.897
CNS0095595Whole white alabastrum(diploid) 25.225
CNS0095596Whole white alabastrum(diploid) 35.312
CNS0095597Whole white alabastrum(diploid) 45.658
CNS0095598Silvery flower (diploied) 110.079
CNS0095599Silvery flower (diploied) 27.585
CNS0095600Silvery flower (diploied) 321.063
CNS0095601Golden flower (diploid) 16.864
CNS0095602Golden flower (diploid) 218.525
CNS0095603Golden flower (diploid) 318.946
CNS0095604Slightly white alabastrum(tetraploid) 18.227
CNS0095605Slightly white alabastrum(tetraploid) 25.313
CNS0095606Slightly white alabastrum(tetraploid) 312.840
CNS0095607Whole white alabastrum(tetraploid) 15.183
CNS0095608Whole white alabastrum(tetraploid) 24.362
CNS0095609Whole white alabastrum(tetraploid) 39.804
CNS0095610Silvery flower (tetraploid) 122.648
CNS0095611Silvery flower (tetraploid) 222.376
CNS0095612Silvery flower (tetraploid) 325.541
CNS0095613Golden flower (tetraploid) 111.611
CNS0095614Golden flower (tetraploid) 221.189
CNS0095615Golden flower (tetraploid) 323.581
CRA001975CRR073297Stem 110.237
CRR073298Stem 29.471
CRR073299Stem 36.585
CRR073300Leaf 110.823
CRR073301Leaf 210.046
CRR073302Leaf 36.374
CRR073303Juvenile bud 18.387
CRR073304Juvenile bud 25.695
CRR073305Juvenile bud 311.988
CRR073306Third green 17.620
CRR073307Third green 24.535
CRR073308Third green 37.102
CRR073309Second white 16.474
CRR073310Second white 211.130
CRR073311Second white 39.177
CRR073312Silver flowering 16.185
CRR073313Silver flowering 26.800
CRR073314Silver flowering 35.473
CRR073315Gold flowering 17.156
CRR073316Gold flowering 212.159
CRR073317Gold flowering 33.856
CRR073318Tawny withering 111.529
CRR073319Tawny withering 29.777
CRR073320Tawny withering 310.968