Gene detail

Detail information of GWHGAAZE000359

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009801112.1	0	PREDICTED: casein kinase I-like [Nicotiana sylvestris]
COG	YP_002759577.1	1E-13	putative serine/threonine protein kinase
Swissprot	tr\|P42158\|KC1D_ARATH	3E-178	Casein kinase I isoform delta-like
trEMBL	tr\|M1BS30\|M1BS30_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400051696}
TAIR10	AT4G28540.1	0	casein kinase I-like 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	6936879	6943497	+
GWHAAZE00000001	mRNA	6936879	6943497	+
GWHAAZE00000001	exon	6936879	6936954	+
GWHAAZE00000001	exon	6937101	6937141	+
GWHAAZE00000001	exon	6937869	6937980	+
GWHAAZE00000001	exon	6938114	6938262	+
GWHAAZE00000001	exon	6938357	6938452	+
GWHAAZE00000001	exon	6938676	6938746	+
GWHAAZE00000001	exon	6938998	6939092	+
GWHAAZE00000001	exon	6939179	6939215	+
GWHAAZE00000001	exon	6939490	6939551	+
GWHAAZE00000001	exon	6939651	6939714	+
GWHAAZE00000001	exon	6939842	6939926	+
GWHAAZE00000001	exon	6940441	6940567	+
GWHAAZE00000001	exon	6940672	6940745	+
GWHAAZE00000001	exon	6940837	6940900	+
GWHAAZE00000001	exon	6942519	6942649	+
GWHAAZE00000001	exon	6942897	6943497	+
GWHAAZE00000001	CDS	6936879	6936954	+
GWHAAZE00000001	CDS	6937101	6937141	+
GWHAAZE00000001	CDS	6937869	6937980	+
GWHAAZE00000001	CDS	6938114	6938262	+
GWHAAZE00000001	CDS	6938357	6938452	+
GWHAAZE00000001	CDS	6938676	6938746	+
GWHAAZE00000001	CDS	6938998	6939092	+
GWHAAZE00000001	CDS	6939179	6939215	+
GWHAAZE00000001	CDS	6939490	6939551	+
GWHAAZE00000001	CDS	6939651	6939714	+
GWHAAZE00000001	CDS	6939842	6939926	+
GWHAAZE00000001	CDS	6940441	6940567	+
GWHAAZE00000001	CDS	6940672	6940745	+
GWHAAZE00000001	CDS	6940837	6940900	+
GWHAAZE00000001	CDS	6942519	6942649	+
GWHAAZE00000001	CDS	6942897	6943166	+
GWHAAZE00000001	three_prime_UTR	6943167	6943497	+

Transcript Sequence
>GWHTAAZE000359 ATGGATCATGTTGTGGGTGGAAAGTTTAAGCTGGGAAGGAAAATTGGGAGCGGTTCTTTTGGCGAGCTTTATTTAGGTGTTAATATACAAAGTGGAGAAGAAGTTGGCATCAAGCTGGAATCTGTGAAGACTAAGCATCCCCAGCTTCACTACGAGTCAAAAATCTACATGCTTCTCCAAGGAGGAAGTGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGGGGATTCCCAACCTCAAATGGTTTGGAGTTGAGGGGGATTACAGTGTAATGGTTATTGACCTTCTTGGACCGAGTCTTGAGGACCTATTCAATTATTGCAATAGAAAGTTCACTTTGAAAACAGTATTAATGCTTGCAGATCAATTAATTAATAGAGTTGAATACATGCATTCAAGAGGTTTTCTTCATCGTGATATAAAGCCCGACAACTTTTTAATGGGCCTAGGGCGCAAAGCAAATCAAGTCTATATTATTGACTTTGGCCTTGCAAAAAAGTATAGAGATCTGCAGACACATAAGCACATACCATACAGGACTGAAATGTGGGGAAGTTTGTTAGGTCAAAAGTGTCAAACCCAATATGGAAACCACGTTTCAACAGTTGTTAATCATTTGGAGAAAAATTCAGATGCGATCTCATTGACAAGAACTTTTGAGTCCCAGAGGGAAAACAAGAATCTTACTGGCACAGCTCGCTATGCAAGTGTCAACACACACCTTGGAGTTGAACAAAGCAGGAGGGATGATCTGGAATCTCTTGGTTACGTGCTTATGTATTTTCTAAGAGGATGTCTTCCCTGGCAAGGATTGAAAGCTGGCACCAAAAAGCAGAAATATGACAAGATCAGTGAAAAGAAGATGTTAACTCCAATAGAGGTTCTTTGCAGATCATATCCCTCTGAGTTCACTTCCTACTTTCACTATTGCCGGTCCTTGCGCTTTGAAGACAAGCCCGACTACTCTTATTTGAAGAGGCTGTTCCGAGACTTATTTATTCGTGAAGGCTATCAATTTGATTACGTGTTTGATTGGACTATATTGAAGTATCCACAGATCGGTGCTAGCTCTAGAGGACGAAATCCCACTGGAAATGCAGGTTTAAATGCTGGACCGTCTGTAGAAAGGCCGGGAAGGAACTCAGGGCAAGATATTCGAGAGAAATTCTCAGGCGCAGTGGAAGCATTTTCTAGGAGAAATACTTCAGGCCCCACTCGGCATGGTGAACACGTGAGACACAGGACTTTGGAAGACATACCTTCATCCCTTGATGCGCAACCTACAGAAAAAAGCAAAAATTCTCGAAATGGGAGCTCTTCGAAAAGAGCTGCCATGTCCGGCACCAAACCGAGCTCCTCTGGCGACTTCACCGATCCCCGGGCAAACCAGCTAGTATCAAGCACCGGGCGCGTGTCTAGTACGCAAAGAGGAGCCCAACAACCTGCATTGGATTCGAAACCACCAGCATTTTCTCGTACTGCGGTCACAAAGGGAAACCGGGACGATGCGCTTCGGAGTTTTGAGTTCCTCTCCATCAGGAAATGAAAAAGAGGGTGTTTGGGGGGAATCATCATTATTTGTATGGTAAAAAAAAGAAGTTAAAAAAAAAGTAGTGCTCTTTTGTCGGTTGAAAATTTCAAATACCAAACTGTTTTTCTGGTCCTTGTAAATGGGAAAAATTATGTTTTATAGCGCAGTTAAGAGTTGGCGTGCCAGGAAAATATTTCTGTTGTGTTTTTATTTTCGGAATTTCCGGTGGTGGTTGTAATGCAGTACTTTTAGGCTCATCCAAAGAAAGATGGGTGAGTTCATATATATATATATATGGGGGTGTATGGGAAGTTTTACATTGCGAAGCAGATGGATTGTTAAGGCA

Network for GWHGAAZE000359

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	10	175	6.00E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1

KEGG pathway

KO	Enzyme	pathway	mapID
K08960	CSNK1E	Wnt signaling pathway	map04310
		Hedgehog signaling pathway	map04340
		Hedgehog signaling pathway - fly	map04341
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Hippo signaling pathway - multiple species	map04392
		FoxO signaling pathway	map04068
		Circadian rhythm	map04710
		Circadian rhythm - fly	map04711

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.757
	SRR3591706	second leaf	13.238
	SRR3591707	mature leaf	20.962
	SRR3591708	Shoot apex	17.028
	SRR3591709	Stem	35.411
	SRR3591710	White floral bud	34.992
	SRR3591711	White flower	36.337
	SRR3591712	Green floral bud	32.068
	SRR3591713	Yellow flower	30.072
SRP173429	SRR8316895	Juvenile bud stage	19.756
	SRR8316896	Juvenile bud stage	30.151
	SRR8316897	Juvenile bud stage	16.135
	SRR8316894	Third green stage	13.513
	SRR8316900	Third green stage	37.943
	SRR8316901	Third green stage	34.167
	SRR8316898	Complete white stage	20.399
	SRR8316899	Complete white stage	49.272
	SRR8316903	Complete white stage	31.705
	SRR8316902	Silver flowering stage	19.997
	SRR8316904	Silver flowering stage	28.135
	SRR8316905	Silver flowering stage	12.900
	SRR8316906	Gold flowering stage	41.847
	SRR8316907	Gold flowering stage	41.799
	SRR8316908	Gold flowering stage	43.585
SRP132670	SRR6706286	Control	25.196
	SRR6706287	Light intensity 50%	24.658
	SRR6706288	Light intensity 20%	24.076
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.162
	CNS0095593	Slightly white alabastrum(diploid) 2	34.536
	CNS0095594	Slightly white alabastrum(diploid) 3	39.320
	CNS0095595	Whole white alabastrum(diploid) 2	32.658
	CNS0095596	Whole white alabastrum(diploid) 3	35.630
	CNS0095597	Whole white alabastrum(diploid) 4	36.734
	CNS0095598	Silvery flower (diploied) 1	36.749
	CNS0095599	Silvery flower (diploied) 2	35.320
	CNS0095600	Silvery flower (diploied) 3	43.888
	CNS0095601	Golden flower (diploid) 1	32.323
	CNS0095602	Golden flower (diploid) 2	40.715
	CNS0095603	Golden flower (diploid) 3	41.852
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.373
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.845
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.253
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.022
	CNS0095610	Silvery flower (tetraploid) 1	40.444
	CNS0095611	Silvery flower (tetraploid) 2	40.859
	CNS0095612	Silvery flower (tetraploid) 3	45.181
	CNS0095613	Golden flower (tetraploid) 1	39.000
	CNS0095614	Golden flower (tetraploid) 2	43.649
	CNS0095615	Golden flower (tetraploid) 3	46.566
CRA001975	CRR073297	Stem 1	29.689
	CRR073298	Stem 2	27.761
	CRR073299	Stem 3	21.257
	CRR073300	Leaf 1	36.040
	CRR073301	Leaf 2	34.371
	CRR073302	Leaf 3	23.831
	CRR073303	Juvenile bud 1	30.487
	CRR073304	Juvenile bud 2	22.333
	CRR073305	Juvenile bud 3	24.930
	CRR073306	Third green 1	26.969
	CRR073307	Third green 2	22.619
	CRR073308	Third green 3	22.318
	CRR073309	Second white 1	25.550
	CRR073310	Second white 2	35.120
	CRR073311	Second white 3	31.584
	CRR073312	Silver flowering 1	26.649
	CRR073313	Silver flowering 2	24.561
	CRR073314	Silver flowering 3	18.692
	CRR073315	Gold flowering 1	15.928
	CRR073316	Gold flowering 2	22.377
	CRR073317	Gold flowering 3	12.555
	CRR073318	Tawny withering 1	26.174
	CRR073319	Tawny withering 2	28.182
	CRR073320	Tawny withering 3	26.667