Detail information of GWHGAAZE000365


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275953.10PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Vitis vinifera]
COGYP_001878312.14E-134succinyl-CoA synthetase, beta subunit
Swissprottr|Q6K9N6|SUCB_ORYSJ0Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Precursor)
trEMBLtr|A5BF93|A5BF93_VITVI0Succinyl-CoA ligase subunit beta {ECO:0000256|RuleBase:RU361258}
TAIR10AT2G20420.10ATP citrate lyase (ACL) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene71178817126084-
GWHAAZE00000001mRNA71178817126084-
GWHAAZE00000001exon71257077126084-
GWHAAZE00000001exon71249927125102-
GWHAAZE00000001exon71245637124674-
GWHAAZE00000001exon71235417123605-
GWHAAZE00000001exon71207487120825-
GWHAAZE00000001exon71202847120358-
GWHAAZE00000001exon71200217120173-
GWHAAZE00000001exon71197367119870-
GWHAAZE00000001exon71189997119163-
GWHAAZE00000001exon71186827118804-
GWHAAZE00000001exon71180357118106-
GWHAAZE00000001exon71178817117958-
GWHAAZE00000001five_prime_UTR71258097126084-
GWHAAZE00000001CDS71257077125808-
GWHAAZE00000001CDS71249927125102-
GWHAAZE00000001CDS71245637124674-
GWHAAZE00000001CDS71235417123605-
GWHAAZE00000001CDS71207487120825-
GWHAAZE00000001CDS71202847120358-
GWHAAZE00000001CDS71200217120173-
GWHAAZE00000001CDS71197367119870-
GWHAAZE00000001CDS71189997119163-
GWHAAZE00000001CDS71186827118804-
GWHAAZE00000001CDS71180357118106-
GWHAAZE00000001CDS71178817117958-
Transcript Sequence

Network for GWHGAAZE000365

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0218


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08442.11ATP-grasp_2292371.10E-60
PF00549.20Ligase_CoA2974171.70E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01900LSC2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Propanoate metabolismmap00640

Gene Ontology

GO term OntologyName
GO:0006099biological_processtricarboxylic acid cycle
GO:0005524molecular_functionATP binding
GO:0046872molecular_functionmetal ion binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf175.247
SRR3591706second leaf62.386
SRR3591707mature leaf49.779
SRR3591708Shoot apex107.585
SRR3591709Stem101.653
SRR3591710White floral bud105.646
SRR3591711White flower119.788
SRR3591712Green floral bud146.907
SRR3591713Yellow flower112.589
SRP173429 SRR8316895Juvenile bud stage 69.193
SRR8316896Juvenile bud stage 106.138
SRR8316897Juvenile bud stage 54.750
SRR8316894Third green stage 45.554
SRR8316900Third green stage 166.183
SRR8316901Third green stage 152.755
SRR8316898Complete white stage 54.778
SRR8316899Complete white stage 127.888
SRR8316903Complete white stage 71.836
SRR8316902Silver flowering stage65.582
SRR8316904Silver flowering stage86.774
SRR8316905Silver flowering stage43.431
SRR8316906Gold flowering stage 171.373
SRR8316907Gold flowering stage 147.434
SRR8316908Gold flowering stage 162.047
SRP132670SRR6706286Control112.696
SRR6706287Light intensity 50%115.444
SRR6706288Light intensity 20%128.073
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1106.421
CNS0095593Slightly white alabastrum(diploid) 2113.983
CNS0095594Slightly white alabastrum(diploid) 3108.644
CNS0095595Whole white alabastrum(diploid) 2120.178
CNS0095596Whole white alabastrum(diploid) 3151.156
CNS0095597Whole white alabastrum(diploid) 4130.488
CNS0095598Silvery flower (diploied) 168.948
CNS0095599Silvery flower (diploied) 262.853
CNS0095600Silvery flower (diploied) 3108.146
CNS0095601Golden flower (diploid) 161.562
CNS0095602Golden flower (diploid) 298.821
CNS0095603Golden flower (diploid) 389.648
CNS0095604Slightly white alabastrum(tetraploid) 1155.169
CNS0095605Slightly white alabastrum(tetraploid) 2130.777
CNS0095606Slightly white alabastrum(tetraploid) 3143.123
CNS0095607Whole white alabastrum(tetraploid) 1124.910
CNS0095608Whole white alabastrum(tetraploid) 2137.725
CNS0095609Whole white alabastrum(tetraploid) 3183.804
CNS0095610Silvery flower (tetraploid) 1104.314
CNS0095611Silvery flower (tetraploid) 296.871
CNS0095612Silvery flower (tetraploid) 3100.814
CNS0095613Golden flower (tetraploid) 176.140
CNS0095614Golden flower (tetraploid) 299.684
CNS0095615Golden flower (tetraploid) 394.710
CRA001975CRR073297Stem 1115.540
CRR073298Stem 2111.679
CRR073299Stem 3125.796
CRR073300Leaf 1161.459
CRR073301Leaf 2146.761
CRR073302Leaf 3165.758
CRR073303Juvenile bud 1192.090
CRR073304Juvenile bud 2159.709
CRR073305Juvenile bud 3163.367
CRR073306Third green 1119.346
CRR073307Third green 2113.684
CRR073308Third green 3106.755
CRR073309Second white 1149.994
CRR073310Second white 2117.330
CRR073311Second white 3117.729
CRR073312Silver flowering 1135.372
CRR073313Silver flowering 2154.314
CRR073314Silver flowering 3126.024
CRR073315Gold flowering 150.718
CRR073316Gold flowering 255.784
CRR073317Gold flowering 355.999
CRR073318Tawny withering 192.977
CRR073319Tawny withering 290.643
CRR073320Tawny withering 3107.501