Gene detail

Detail information of GWHGAAZE000371

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006364566.1	1.0763E-143	PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Solanum tuberosum]
Swissprot	tr\|Q8RXD4\|BRCA1_ARATH	1E-66	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog
trEMBL	tr\|M1B6E7\|M1B6E7_SOLTU	9E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400038152}
TAIR10	AT1G04020.1	4E-84	breast cancer associated RING 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	7197602	7202464	+
GWHAAZE00000001	mRNA	7197602	7202464	+
GWHAAZE00000001	exon	7197602	7197681	+
GWHAAZE00000001	exon	7198226	7198296	+
GWHAAZE00000001	exon	7198885	7198980	+
GWHAAZE00000001	exon	7199109	7199188	+
GWHAAZE00000001	exon	7199283	7199561	+
GWHAAZE00000001	exon	7200240	7200572	+
GWHAAZE00000001	exon	7200657	7200757	+
GWHAAZE00000001	exon	7200890	7201073	+
GWHAAZE00000001	exon	7201167	7201279	+
GWHAAZE00000001	exon	7201661	7201751	+
GWHAAZE00000001	exon	7201929	7202094	+
GWHAAZE00000001	exon	7202289	7202464	+
GWHAAZE00000001	five_prime_UTR	7197602	7197681	+
GWHAAZE00000001	five_prime_UTR	7198226	7198296	+
GWHAAZE00000001	five_prime_UTR	7198885	7198904	+
GWHAAZE00000001	CDS	7198905	7198980	+
GWHAAZE00000001	CDS	7199109	7199188	+
GWHAAZE00000001	CDS	7199283	7199561	+
GWHAAZE00000001	CDS	7200240	7200572	+
GWHAAZE00000001	CDS	7200657	7200757	+
GWHAAZE00000001	CDS	7200890	7201073	+
GWHAAZE00000001	CDS	7201167	7201279	+
GWHAAZE00000001	CDS	7201661	7201751	+
GWHAAZE00000001	CDS	7201929	7202094	+
GWHAAZE00000001	CDS	7202289	7202464	+

Transcript Sequence
>GWHTAAZE000373 ATGGATGCTTTCCATCGGTTTCTCAATCCATGGCTCCTTCATCTCCAGAAATTCGGCCTCGAGCTCAAATGCCCTCTTTGATTTTGCATACCAAGAGAGACTCAGTTTGGATCTGAATGCCCTGCTTGTAAACATCAGTTTGTTGACCAAGAGGTACGACCAGCACCTTACATGGAGAATATGGTAACCATTTATCGAAGCTTGGATGCTACTATCAATGCTAGCCTCTTTCAGCCTGCTTCTTTGGACGTTGGGAGGGGGTCAGATCAGTACCCAGTTTCAGCCAAGACAAAAACTGATGCCGAGTTACAAAAGGAGCATTTAGAAATGGAGTTGACTTTACTGGGAAAAATGTCAAAACTCTCACTGAGAAGTGGTGAAGAGGAGTCATTGGAGCTGTATGGTGGGAGTGGAATGGATTTTAATGTTGGGGACAAGTTGATGCCATTATTGTTTCCTCTTCAAGAGGGAGATGAGAACAATATAATGCTTGGAACGGGAAACATTGTTGCAAGTCAATTGGAACAGTTGTCACCGGCAAGTCCACCATCATTTGGCGATACCAAAGAGACAGATGGCAACAGTGGTCCAGGCAGCAGCAATAATAGTGTAGAAAAGTCAACAACAAAAAGGCTACTTGATAATGAGTTGGATATGGCAGGTGGTGATATGAATAACGGAGGTACCTCAGGAGCCAATTGTCATGCAAGGGATATCAAAAGACAGAAGAATTTGAATAATGGATTCTTTGAGATTGATGTGAAAAGCAATGGCCCCGCTCAACAAAATAATTTGTGTGCTGAAAATAAAACTCCTAGTAGTGAACTGGAAGGTAAATTTGGTGAGCCTCTTTCTTGTGAGCAGTCAACCATGGTTTCGGACTTGCAAGATGCAAATAAGAGTGCTTGTGCCTTCTGTTTCTCTTCTGAACAATCAGATGGGACAGGGCCAATGTTGCATTACGCCAATGGCAAGGAAGTAGTAGGAGATGCAAGTAACTTTTCCAATGTCCTTCATGTTCACCAAAACTGCATTGATTGGTCGCCTCAAGTTTACTACAAGGGTGAAGAAATTAAGAATTTGGAGTCTGAATTGGCAAGGGCAGCTAAGCTTAAGTGCAGCACCTGTGGGCAAAAGGGAGCAGCACTTGGCTGCTTTGTCAAGTCCTGTCGAAAAAGTTACCATTTACCTTGTGCATTAAACTTAGACTGCAGATGGGATTCTGAGGACTTTCTGATGCTTTGCCCAAGTCACAAGAACGTCAGATTTCCCAGAGAAAAGAAATTCAAATCTAGAAAGCATGCTAATGGAGAAAAACAACAGGTGCCAACTCAAATGATCTCCAAGCAGCCGAACTTTGAAGCAGCATCTCCTAGCGCAGCAAAAGAATGGGTTTTATGTGGATCTGCTCTATCTTCTGAAGAGAAGCGTTGTCTGTTAAAGTTTGCAAGCAGTTATGGTGCTATTGTGTCCAGGTGTTGGAATCCAAATGTTACCCATGTGATTGCTGCTACAGATGAAAATGGTGCATGTACAAGGACACTAAAAGTTCTAATGGCGATTTTGAATGGAAGATGGATCCTTACGATGGACTCAACATGCACTTTTTTTCTCTTTTCCTTTTTAGGGATAAAGGCCAGTATTGAAGCGAAGCAACCAGTGTATGAAGAACCTTATGAAGTTAAACTCGACAATCATGGTTGTTATGGTGGCCCCAGATCTGGCAGACTTAAGGCCTTTCATAATGTAAGACCCCACTATTTTTTGTAA

Network for GWHGAAZE000371

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13771.7	zf-HC5HC2H	284	361	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10683	BARD1	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.802
	SRR3591706	second leaf	2.752
	SRR3591707	mature leaf	2.571
	SRR3591708	Shoot apex	21.436
	SRR3591709	Stem	2.611
	SRR3591710	White floral bud	3.181
	SRR3591711	White flower	3.064
	SRR3591712	Green floral bud	2.683
	SRR3591713	Yellow flower	2.304
SRP173429	SRR8316895	Juvenile bud stage	3.057
	SRR8316896	Juvenile bud stage	2.564
	SRR8316897	Juvenile bud stage	1.096
	SRR8316894	Third green stage	1.115
	SRR8316900	Third green stage	1.058
	SRR8316901	Third green stage	0.559
	SRR8316898	Complete white stage	0.076
	SRR8316899	Complete white stage	0.687
	SRR8316903	Complete white stage	0.034
	SRR8316902	Silver flowering stage	0.144
	SRR8316904	Silver flowering stage	0.309
	SRR8316905	Silver flowering stage	0.153
	SRR8316906	Gold flowering stage	0.490
	SRR8316907	Gold flowering stage	0.396
	SRR8316908	Gold flowering stage	0.574
SRP132670	SRR6706286	Control	0.773
	SRR6706287	Light intensity 50%	1.503
	SRR6706288	Light intensity 20%	1.609
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.273
	CNS0095593	Slightly white alabastrum(diploid) 2	0.844
	CNS0095594	Slightly white alabastrum(diploid) 3	0.582
	CNS0095595	Whole white alabastrum(diploid) 2	0.261
	CNS0095596	Whole white alabastrum(diploid) 3	0.251
	CNS0095597	Whole white alabastrum(diploid) 4	0.363
	CNS0095598	Silvery flower (diploied) 1	1.098
	CNS0095599	Silvery flower (diploied) 2	1.884
	CNS0095600	Silvery flower (diploied) 3	0.676
	CNS0095601	Golden flower (diploid) 1	0.588
	CNS0095602	Golden flower (diploid) 2	0.383
	CNS0095603	Golden flower (diploid) 3	0.330
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.189
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.322
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.256
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.267
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.932
	CNS0095610	Silvery flower (tetraploid) 1	1.273
	CNS0095611	Silvery flower (tetraploid) 2	1.623
	CNS0095612	Silvery flower (tetraploid) 3	0.629
	CNS0095613	Golden flower (tetraploid) 1	0.643
	CNS0095614	Golden flower (tetraploid) 2	0.665
	CNS0095615	Golden flower (tetraploid) 3	0.773
CRA001975	CRR073297	Stem 1	6.721
	CRR073298	Stem 2	3.717
	CRR073299	Stem 3	5.142
	CRR073300	Leaf 1	1.309
	CRR073301	Leaf 2	1.259
	CRR073302	Leaf 3	0.134
	CRR073303	Juvenile bud 1	0.556
	CRR073304	Juvenile bud 2	0.261
	CRR073305	Juvenile bud 3	0.052
	CRR073306	Third green 1	0.001
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.035
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.435
	CRR073312	Silver flowering 1	0.178
	CRR073313	Silver flowering 2	0.032
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.052
	CRR073316	Gold flowering 2	0.233
	CRR073317	Gold flowering 3	0.142
	CRR073318	Tawny withering 1	3.076
	CRR073319	Tawny withering 2	3.729
	CRR073320	Tawny withering 3	3.429