Gene detail

Detail information of GWHGAAZE000384

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009767832.1	2.21029E-69	PREDICTED: auxin-responsive protein IAA12-like isoform X3 [Nicotiana sylvestris]
Swissprot	tr\|Q38831\|IAA13_ARATH	4E-51	Auxin-responsive protein IAA13
trEMBL	tr\|F6HZR1\|F6HZR1_VITVI	6E-69	Auxin-responsive protein {ECO:0000256\|RuleBase:RU004549}
TAIR10	AT2G33310.2	7E-41	auxin-induced protein 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	7419479	7421726	+
GWHAAZE00000001	mRNA	7419479	7421726	+
GWHAAZE00000001	exon	7419479	7419749	+
GWHAAZE00000001	exon	7420642	7420777	+
GWHAAZE00000001	exon	7421075	7421136	+
GWHAAZE00000001	exon	7421223	7421726	+
GWHAAZE00000001	CDS	7419479	7419749	+
GWHAAZE00000001	CDS	7420642	7420777	+
GWHAAZE00000001	CDS	7421075	7421136	+
GWHAAZE00000001	CDS	7421223	7421272	+
GWHAAZE00000001	three_prime_UTR	7421273	7421726	+

Transcript Sequence
>GWHTAAZE000386 ATGAACAGCTTGGTTAACCATGCAAAATCACCAACCACTGAAGAATTGAGCTCAAAAGTCGAGGAGAGTGAAAGCAAGAATGTTATTTTAGACAATAGTAACAATGGAAGCAACAAGAACAACCACGTTGCTAAGGAGAAAGGACCTCCCAAGCCTTCGCTATTTGTAAAGGTGAATATGGATGGAACTCTGATTGGAAGGAAAGTGGATCTGAATGCTCATAGATGCTATGATACCTTAACTCGAACTCTCGATGAGATGTTCTGCAGACGGTCAAGCATAGAAGAAAATGGCATGACAACAAAAGAAATGGCACCGTCAAAATTGTTGGATGGATCATCCGAGTTTGTGCTTACCTATGAAGACAAAGATGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGAGAATGTTTCTTAACTCTGTGAAGAGGCTTAGAATCATGAGGACGTCCGAGGCAAATGGACTCGCTCCAAGTTTTCAAGAAAGGAAAGGGAGGCAAAGAACTAAAGCTGTCTAATTAAATTTTTCCCCTTCATTTTCAGCAAGATGAAATCGAATCTTCAGTAGAAGAAAGAATACAGAAGTATAAACGGATATACGTGTAATGACTCAATCGGTTGCTTTGGTTGTTTCTATATCTTCAATCTTATTCGCGTGTTATTTTTTACGCACTTTCTCTCGGGAGAGAGCCCGTTTGCCTTGGAAGCTACAAGCATTCCTACTTAAATACACACATTCACACACCTCACTGAAAAATTTGGTTTTTTTTTCCCTTTCATTATTGTAATTATGGCAGTGTTTTAATGGCTAGGGTTTTGAGTTTGCTGCACCCTAAACTGGATTCTTTTTGGTCCTTTATAATGAAAGAGAAGGTTTGCGTGGTCTGTACTTGAAACTGTCCACTGTGTTGCTACAACATATTCTTTTGTTTCTTCATATTTCTCTTTAATGTGTTATACTTTATGCTACTA

Network for GWHGAAZE000384

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02309.17	AUX_IAA	26	158	4.00E-50

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	pathway	mapID
K14484	IAA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.666
	SRR3591706	second leaf	20.761
	SRR3591707	mature leaf	24.633
	SRR3591708	Shoot apex	25.905
	SRR3591709	Stem	99.929
	SRR3591710	White floral bud	177.937
	SRR3591711	White flower	119.262
	SRR3591712	Green floral bud	83.464
	SRR3591713	Yellow flower	85.688
SRP173429	SRR8316895	Juvenile bud stage	15.332
	SRR8316896	Juvenile bud stage	35.528
	SRR8316897	Juvenile bud stage	16.791
	SRR8316894	Third green stage	18.917
	SRR8316900	Third green stage	43.723
	SRR8316901	Third green stage	46.983
	SRR8316898	Complete white stage	103.150
	SRR8316899	Complete white stage	88.681
	SRR8316903	Complete white stage	166.051
	SRR8316902	Silver flowering stage	74.635
	SRR8316904	Silver flowering stage	126.820
	SRR8316905	Silver flowering stage	74.711
	SRR8316906	Gold flowering stage	174.405
	SRR8316907	Gold flowering stage	106.289
	SRR8316908	Gold flowering stage	151.796
SRP132670	SRR6706286	Control	11.259
	SRR6706287	Light intensity 50%	12.555
	SRR6706288	Light intensity 20%	13.173
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.163
	CNS0095593	Slightly white alabastrum(diploid) 2	27.082
	CNS0095594	Slightly white alabastrum(diploid) 3	27.607
	CNS0095595	Whole white alabastrum(diploid) 2	18.888
	CNS0095596	Whole white alabastrum(diploid) 3	24.777
	CNS0095597	Whole white alabastrum(diploid) 4	26.847
	CNS0095598	Silvery flower (diploied) 1	32.113
	CNS0095599	Silvery flower (diploied) 2	44.303
	CNS0095600	Silvery flower (diploied) 3	74.913
	CNS0095601	Golden flower (diploid) 1	33.254
	CNS0095602	Golden flower (diploid) 2	41.187
	CNS0095603	Golden flower (diploid) 3	41.592
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.546
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.830
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.807
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.597
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.960
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.345
	CNS0095610	Silvery flower (tetraploid) 1	41.290
	CNS0095611	Silvery flower (tetraploid) 2	43.227
	CNS0095612	Silvery flower (tetraploid) 3	87.441
	CNS0095613	Golden flower (tetraploid) 1	46.209
	CNS0095614	Golden flower (tetraploid) 2	35.310
	CNS0095615	Golden flower (tetraploid) 3	93.547
CRA001975	CRR073297	Stem 1	36.329
	CRR073298	Stem 2	37.761
	CRR073299	Stem 3	52.868
	CRR073300	Leaf 1	24.449
	CRR073301	Leaf 2	15.955
	CRR073302	Leaf 3	20.955
	CRR073303	Juvenile bud 1	30.376
	CRR073304	Juvenile bud 2	65.246
	CRR073305	Juvenile bud 3	34.687
	CRR073306	Third green 1	131.850
	CRR073307	Third green 2	159.095
	CRR073308	Third green 3	117.043
	CRR073309	Second white 1	151.592
	CRR073310	Second white 2	159.317
	CRR073311	Second white 3	102.979
	CRR073312	Silver flowering 1	59.185
	CRR073313	Silver flowering 2	62.510
	CRR073314	Silver flowering 3	63.152
	CRR073315	Gold flowering 1	8.411
	CRR073316	Gold flowering 2	11.307
	CRR073317	Gold flowering 3	14.010
	CRR073318	Tawny withering 1	21.863
	CRR073319	Tawny withering 2	24.101
	CRR073320	Tawny withering 3	19.126