Gene detail

Detail information of GWHGAAZE000393

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008235576.1	0	PREDICTED: WD repeat-containing protein 70 [Prunus mume]
COG	YP_003167824.1	1E-19	WD-40 repeat-containing protein
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	4E-13	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|M5W2F2\|M5W2F2_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00955.1}
TAIR10	AT2G20330.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	7559457	7563347	+
GWHAAZE00000001	mRNA	7559457	7563347	+
GWHAAZE00000001	exon	7559457	7559990	+
GWHAAZE00000001	exon	7560630	7560842	+
GWHAAZE00000001	exon	7560967	7561167	+
GWHAAZE00000001	exon	7561603	7561710	+
GWHAAZE00000001	exon	7561840	7561977	+
GWHAAZE00000001	exon	7562089	7562205	+
GWHAAZE00000001	exon	7562286	7562312	+
GWHAAZE00000001	exon	7562744	7563064	+
GWHAAZE00000001	exon	7563167	7563347	+
GWHAAZE00000001	CDS	7559457	7559990	+
GWHAAZE00000001	CDS	7560630	7560842	+
GWHAAZE00000001	CDS	7560967	7561167	+
GWHAAZE00000001	CDS	7561603	7561710	+
GWHAAZE00000001	CDS	7561840	7561977	+
GWHAAZE00000001	CDS	7562089	7562205	+
GWHAAZE00000001	CDS	7562286	7562312	+
GWHAAZE00000001	CDS	7562744	7563064	+
GWHAAZE00000001	CDS	7563167	7563295	+
GWHAAZE00000001	three_prime_UTR	7563296	7563347	+

Transcript Sequence
>GWHTAAZE000395 ATGGAGGAAGCGGAGATTTACGATGGAATAAGAGCTCAATTCCCCCTCTCCTTCGGCAAACAACCCAAGTCCCAAACCCCTCTCGAATCCCTCCACAAATCCACCCTCCGCGCCACCACCACCCCCAGCACCGCCGTCGATGATCAGAAACCCTCTTCATCTTCTCGCTCAGTTTCCGAAGTCTTTCCTTCGATCTCTTCTTCTTCTAAAGCCTGGTTAGATACTCTCAAAAGCCCTAATCGCAATAACCCAAACCCTAACCCTAACCTTAACCCTAGTGATGATATGAAAATTAGGCCGCCTTTGGCTGAGAATGGGGAGGAGGATGACGGTGAGATGATTGGGCCGCCTCCTCCACCGTCAGCCGCCGATGAGGATGAGAATGATGATGGTGGTGAGATGATTGGCCCACCTTGGCCTCCTATGGGAATGGTTGGGTCGGATACTGAGGATGATGATGAATCAGGTGGTGAAGAAATGGATGTTTATAGTATACCTCTTAGCAATGAGATTGTGTTGAAGGGGCACACTAAGGTTGTTTCTGCTCTTGCAGTTGATCATACCGGATCTAGAGTTATTTCTGGTAGTTATGACTATACAGTTCGTATGTATGATTTTCAAGGAATGAATGCTCGTTTGGAATTGTTTAGACAGCTCGAGCCATCTAAAGGTCACCAAGTTCGTAGTCTAAGTTGGAGTCCTACTGCAGACCGATTTTTGTGTCTGACTGGCTCAGCTCAGGCTAAGATTTATGACCGTGATGGGTTGACTCTGGGTGAGTTTGTGAAAGGGGACATGTGTATTTGTGACCTTAAGAATACCAAAGGCCACAAAATGGGATTGACTTGTGGGGAATGGAATCCTAAAGCACAAGAGACTATTTTAACATCGTCGGAGGATGGTTCACTACGTATATGGGATGTCAATGACTTTACAAGTCAAAAGCAGGTCATCAAACCAAAACTTGCCAGGCCTGGAAGAGTTCCTGTTACTACATGTACTTGGGATCGAGAAGGTAAACGCATTGCAGGTGGTATTGGCGATGGCTCTATACAGATATGGAATCTTAAACCTGGATGGGGAAGCAGGCCAGATATACATGTGACCAACGGTCACTTGGATGAGATCACCGCTCTTAAGTTTTCTAGTGATGGAAGAATTCTATTATCGAGAAGTTTTGATGGTGCATTGAAGGTCTGGGATTTGCGCCAAATAAAGGATCCTCTTAAGGTGTTTGAGGATCTTCCGAATCATTATGCGCAAACAAATATTGCATTTAGTCCAGATGAGCAACTCATCTTGACCGGAATGTGTGCTTGGCACCCAAAGCTGAATCAGGTCTTTGCAACAGCAGGGGATAAAAGACAAGGCGGAACTCATGTACTATATGATCCAACTCTAAGTGAGAGAGGAGCTCTTGTTTGTGTGGCTCGTGCACCAAGGAAAAAGTCGGTTGATGATTTTCAGCCTCAACCAATGATTCACAACCCTCATGCACTACCCTTGTTTAGAGACCAACCAAGCTGTAAGCGTCAGCGCGAGAAAATATTGAAGGACCCACTTAAGTCTCACAAGCCCGAAATTCCCATGAATGGGCCAGGCCATGGCGGAAGAGTTGGTCAAACCAAGGGAAGCTTGTTGACTCAGTACCTTCTTAAGCAAGGTGGTATGATTAAGGAGACATGGATGGATGAAGATCCCAGAGAAGCTATTCTGAAGTATGCTGATGTGGCTGCTAAAGAACCGAAATTCATTGCTCCCTCCAGCCTATGCTCAAATACAGCCTGAAACGATTTTTGAAAAGTCGGATTCTGAGGAGGACAAATGATTTGATTTAAGG

Network for GWHGAAZE000393

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	171	205	0.00027
PF00400.33	WD40	274	307	0.07
PF00400.33	WD40	329	355	0.16
PF00400.33	WD40	366	401	9.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.538
	SRR3591706	second leaf	7.201
	SRR3591707	mature leaf	8.863
	SRR3591708	Shoot apex	8.967
	SRR3591709	Stem	9.442
	SRR3591710	White floral bud	13.802
	SRR3591711	White flower	17.680
	SRR3591712	Green floral bud	12.291
	SRR3591713	Yellow flower	15.570
SRP173429	SRR8316895	Juvenile bud stage	3.535
	SRR8316896	Juvenile bud stage	5.346
	SRR8316897	Juvenile bud stage	0.532
	SRR8316894	Third green stage	2.525
	SRR8316900	Third green stage	5.359
	SRR8316901	Third green stage	6.025
	SRR8316898	Complete white stage	3.826
	SRR8316899	Complete white stage	7.505
	SRR8316903	Complete white stage	6.038
	SRR8316902	Silver flowering stage	3.599
	SRR8316904	Silver flowering stage	6.323
	SRR8316905	Silver flowering stage	2.871
	SRR8316906	Gold flowering stage	6.397
	SRR8316907	Gold flowering stage	7.991
	SRR8316908	Gold flowering stage	4.334
SRP132670	SRR6706286	Control	6.554
	SRR6706287	Light intensity 50%	7.268
	SRR6706288	Light intensity 20%	6.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.763
	CNS0095593	Slightly white alabastrum(diploid) 2	2.526
	CNS0095594	Slightly white alabastrum(diploid) 3	3.307
	CNS0095595	Whole white alabastrum(diploid) 2	3.375
	CNS0095596	Whole white alabastrum(diploid) 3	2.180
	CNS0095597	Whole white alabastrum(diploid) 4	3.510
	CNS0095598	Silvery flower (diploied) 1	4.670
	CNS0095599	Silvery flower (diploied) 2	4.540
	CNS0095600	Silvery flower (diploied) 3	7.439
	CNS0095601	Golden flower (diploid) 1	4.142
	CNS0095602	Golden flower (diploid) 2	7.088
	CNS0095603	Golden flower (diploid) 3	6.128
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.213
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.771
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.294
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.867
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.780
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.182
	CNS0095610	Silvery flower (tetraploid) 1	7.761
	CNS0095611	Silvery flower (tetraploid) 2	7.881
	CNS0095612	Silvery flower (tetraploid) 3	8.730
	CNS0095613	Golden flower (tetraploid) 1	5.341
	CNS0095614	Golden flower (tetraploid) 2	6.434
	CNS0095615	Golden flower (tetraploid) 3	6.324
CRA001975	CRR073297	Stem 1	6.239
	CRR073298	Stem 2	5.718
	CRR073299	Stem 3	5.844
	CRR073300	Leaf 1	9.170
	CRR073301	Leaf 2	6.140
	CRR073302	Leaf 3	6.806
	CRR073303	Juvenile bud 1	7.666
	CRR073304	Juvenile bud 2	5.871
	CRR073305	Juvenile bud 3	7.879
	CRR073306	Third green 1	6.151
	CRR073307	Third green 2	4.771
	CRR073308	Third green 3	5.915
	CRR073309	Second white 1	5.873
	CRR073310	Second white 2	5.513
	CRR073311	Second white 3	6.300
	CRR073312	Silver flowering 1	4.973
	CRR073313	Silver flowering 2	5.931
	CRR073314	Silver flowering 3	4.381
	CRR073315	Gold flowering 1	7.291
	CRR073316	Gold flowering 2	8.332
	CRR073317	Gold flowering 3	6.154
	CRR073318	Tawny withering 1	4.555
	CRR073319	Tawny withering 2	6.194
	CRR073320	Tawny withering 3	4.595