Gene detail

Detail information of GWHGAAZE000394

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652426.1	0	PREDICTED: WD repeat-containing protein 70 [Vitis vinifera]
COG	YP_003167824.1	1E-20	WD-40 repeat-containing protein
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	5E-15	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|F6HZR9\|F6HZR9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60185.1}
TAIR10	AT2G20330.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	7574500	7578472	+
GWHAAZE00000001	mRNA	7574500	7578472	+
GWHAAZE00000001	exon	7574500	7575051	+
GWHAAZE00000001	exon	7575769	7575981	+
GWHAAZE00000001	exon	7576106	7576306	+
GWHAAZE00000001	exon	7576703	7576810	+
GWHAAZE00000001	exon	7576940	7577077	+
GWHAAZE00000001	exon	7577189	7577440	+
GWHAAZE00000001	exon	7577873	7578193	+
GWHAAZE00000001	exon	7578296	7578472	+
GWHAAZE00000001	CDS	7574500	7575051	+
GWHAAZE00000001	CDS	7575769	7575981	+
GWHAAZE00000001	CDS	7576106	7576306	+
GWHAAZE00000001	CDS	7576703	7576810	+
GWHAAZE00000001	CDS	7576940	7577077	+
GWHAAZE00000001	CDS	7577189	7577440	+
GWHAAZE00000001	CDS	7577873	7578193	+
GWHAAZE00000001	CDS	7578296	7578460	+
GWHAAZE00000001	three_prime_UTR	7578461	7578472	+

Transcript Sequence
>GWHTAAZE000396 ATGGAGGAGGAAGCAGAGATTTACGATGGAATAAGAGCTCAATTCCCCCTCTCCTTCGGCAAACAATCCAAGTCCCAAACCCCTCTCGAATCCCTCCACAAATCCACCCTCCGCGCCGCCACCACCCCCAGCACCGCCGTCGATGATCAGAAACCCTCTTCATCTTCTCGCTCAGTTTCCGAAGTCTTTCCTTCAATCTCTTCTTCTTCTAAAGCCTGGTTAGATACTCTCAAAAACCCTAATCGCAATAACCCTAACCCTAACCCTAACCTTAACCCTAGTGATGATATGAAAATTAGGCCGCCTCGGCCGCCTTTGGCTGAGAATGGGGAGGAGGATGACGGTGAGATGATTGGGCCGCCTCCTCCACCGCCAGCCACCGATGAGGATGAGGATGAGGATGATGATGGTGGTGAGATGATTGGCCCACCTCGGCCTCCTATGGGAATGGTTGGGTCAGATACTGAGGATGATGATGAATTAGGTGGTGAAGGAATGGACGCGTATCGTATACCTCTTAGCAATGAGATTGTGTTGAAGGGGCACACTAAGGTTGTTTCTGCTCTTGCAGTTGATCATACCGGATCTAGAGTTCTTTCAGGTAGCTACGACTACACAGTTCGTATGTATGATTTTCAAGGAATGAATGCTCGTTTGGAATCGTTTAGACAGCTCGAGCCATCTGAAGGTCACCAAGTTCGTAGTCTAAGTTGGAGTCCTACTGCAGACCGATTTTTGTGTGTGACTGGCTCAGCTCAGGCTAAGATTTATGACCGTGATGGGTTGACTCTGGGTGAGTTTGTGAAAGGGGACATGTATATTCGTGACCTTAAGAATACCAAAGGCCACATAACTGGATTGACTTGTGGGGAATGGAATCCTAAAGCAAAAGAGACTATTTTAACATCGTCAGAGGATGGTTCACTACGTATATGGGATGTCAATGACTTCACAAGTCAAAAGCAGGTCATCAAACCAAAACTTGCCAGGCCTGGAAGAGTTCCTGTTACTACATGTACTTGGGACCGAGAAGGTAAACGCATTGCAGGTGGTATTGGCGATGGCTCTATACAGATATGGAATCTTAAACCTGGATGGGGAAGCAGGCCAGATATACATGTGACCAACGGTCACTTGGATGAGATCACCGCTCTTAAGTTTTCTAGTGATGGAAGAATTCTATTATCGAGAAGTTTTGATGGTACATTGAAGGTCTGGGATTTGCGCCAAATAAAGGATCCTCTTAAGGTGTTTGAGGATCTTCCGAATCATTATGCGCAAACAAATATTGCATTTAGTCCAGATGAGCAACTCATCTTGACCGGAACATCTATTGAAAGGGATAGCACAACTGGTGGTTTGCTATGCTTTTATGACCGTACAAAACTTGAGCTTGTCTCAAGAGTTGGAATATCTCCTACATTTAGCGTTGTGCAGAGTGCTTGGCACCCAAAGCTGAATCAGGTCTTTGCAACAGCAGGGGATAAAAGACAAGGCGGAACTCATGTACTATATGATCCAACCCTAAGTGAGAGAGGAGCTCTTGTTTGTGTGGCTCGTGCACCAAGGAAAAAGTCGGTTGATGATTTTCAGCCTCAACCAATGATTCACAACCCTCATGCACTACCCTTGTTTAGAGACCAACCAAGCCGTAAGCGTCAGCGCGAGAAAATATTGAAGGACCCACTTAAGTCTCACAAGCCTGAAATTCCCATGAATGGGCCCGGCCATGGTGGAAGAGTTGGTCAAACCAAGGGAAGCTTGTTGACTCAGTACCTTCTTAAGCAAGGTGGTATGATTAAGGAGACATGGATGGATGAAGATCCCAGAGAAGCTATTCTGAAGTATGCTGATGTGGCTGCTAAAGAACCGAAATTCATTGCTCCAGCCTATGCTCAAACACAGCCTGAAACAATTTTTGAAAAGTCGGATTCTGAGGAGGACAAATGATTTGATTTAAGG

Network for GWHGAAZE000394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	177	211	0.00036
PF00400.33	WD40	278	313	0.0045
PF00400.33	WD40	335	361	0.18
PF00400.33	WD40	372	407	9.30E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.789
	SRR3591706	second leaf	14.807
	SRR3591707	mature leaf	13.898
	SRR3591708	Shoot apex	23.344
	SRR3591709	Stem	17.638
	SRR3591710	White floral bud	23.785
	SRR3591711	White flower	27.679
	SRR3591712	Green floral bud	22.224
	SRR3591713	Yellow flower	21.208
SRP173429	SRR8316895	Juvenile bud stage	12.949
	SRR8316896	Juvenile bud stage	15.999
	SRR8316897	Juvenile bud stage	5.708
	SRR8316894	Third green stage	8.592
	SRR8316900	Third green stage	22.412
	SRR8316901	Third green stage	17.612
	SRR8316898	Complete white stage	10.603
	SRR8316899	Complete white stage	29.774
	SRR8316903	Complete white stage	15.779
	SRR8316902	Silver flowering stage	10.177
	SRR8316904	Silver flowering stage	14.833
	SRR8316905	Silver flowering stage	7.069
	SRR8316906	Gold flowering stage	18.905
	SRR8316907	Gold flowering stage	18.608
	SRR8316908	Gold flowering stage	18.549
SRP132670	SRR6706286	Control	26.736
	SRR6706287	Light intensity 50%	27.141
	SRR6706288	Light intensity 20%	25.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.443
	CNS0095593	Slightly white alabastrum(diploid) 2	8.775
	CNS0095594	Slightly white alabastrum(diploid) 3	10.049
	CNS0095595	Whole white alabastrum(diploid) 2	10.464
	CNS0095596	Whole white alabastrum(diploid) 3	9.755
	CNS0095597	Whole white alabastrum(diploid) 4	10.016
	CNS0095598	Silvery flower (diploied) 1	14.164
	CNS0095599	Silvery flower (diploied) 2	11.676
	CNS0095600	Silvery flower (diploied) 3	22.148
	CNS0095601	Golden flower (diploid) 1	10.895
	CNS0095602	Golden flower (diploid) 2	18.633
	CNS0095603	Golden flower (diploid) 3	18.655
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.191
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.119
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.243
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.434
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.924
	CNS0095610	Silvery flower (tetraploid) 1	21.964
	CNS0095611	Silvery flower (tetraploid) 2	20.741
	CNS0095612	Silvery flower (tetraploid) 3	20.670
	CNS0095613	Golden flower (tetraploid) 1	13.252
	CNS0095614	Golden flower (tetraploid) 2	18.654
	CNS0095615	Golden flower (tetraploid) 3	17.560
CRA001975	CRR073297	Stem 1	24.454
	CRR073298	Stem 2	21.653
	CRR073299	Stem 3	25.776
	CRR073300	Leaf 1	23.818
	CRR073301	Leaf 2	21.152
	CRR073302	Leaf 3	24.303
	CRR073303	Juvenile bud 1	22.525
	CRR073304	Juvenile bud 2	20.375
	CRR073305	Juvenile bud 3	30.679
	CRR073306	Third green 1	15.694
	CRR073307	Third green 2	14.263
	CRR073308	Third green 3	15.956
	CRR073309	Second white 1	17.581
	CRR073310	Second white 2	14.646
	CRR073311	Second white 3	14.172
	CRR073312	Silver flowering 1	13.915
	CRR073313	Silver flowering 2	17.936
	CRR073314	Silver flowering 3	14.666
	CRR073315	Gold flowering 1	18.921
	CRR073316	Gold flowering 2	28.825
	CRR073317	Gold flowering 3	21.397
	CRR073318	Tawny withering 1	17.337
	CRR073319	Tawny withering 2	17.008
	CRR073320	Tawny withering 3	17.002