Detail information of GWHGAAZE000397


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010936050.10PREDICTED: alcohol dehydrogenase class-3 [Elaeis guineensis]
COGYP_003147226.10S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
Swissprottr|Q96533|ADHX_ARATH0Alcohol dehydrogenase class-3
trEMBLtr|M5VJ61|M5VJ61_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ01129.1}
TAIR10AT5G43940.10GroES-like zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene76245167629071-
GWHAAZE00000001mRNA76245167629071-
GWHAAZE00000001exon76245167624632-
GWHAAZE00000001exon76251617625322-
GWHAAZE00000001exon76253997625556-
GWHAAZE00000001exon76260797626147-
GWHAAZE00000001exon76262407626320-
GWHAAZE00000001exon76271777627502-
GWHAAZE00000001exon76276027627648-
GWHAAZE00000001exon76287597628895-
GWHAAZE00000001exon76290387629071-
GWHAAZE00000001CDS76290387629071-
GWHAAZE00000001CDS76287597628895-
GWHAAZE00000001CDS76276027627648-
GWHAAZE00000001CDS76271777627502-
GWHAAZE00000001CDS76262407626320-
GWHAAZE00000001CDS76260797626147-
GWHAAZE00000001CDS76253997625556-
GWHAAZE00000001CDS76251617625322-
GWHAAZE00000001CDS76245167624632-
Transcript Sequence

Network for GWHGAAZE000397

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08240.13ADH_N351624.70E-25
PF00107.27ADH_zinc_N2023255.60E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00121frmA, ADH5, adhC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Degradation of aromatic compoundsmap01220
Glycolysis / Gluconeogenesismap00010
Methane metabolismmap00680
Fatty acid degradationmap00071
Tyrosine metabolismmap00350
Retinol metabolismmap00830
Chloroalkane and chloroalkene degradationmap00625
Naphthalene degradationmap00626
Metabolism of xenobiotics by cytochrome P450map00980
Drug metabolism - cytochrome P450map00982

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0006069biological_processethanol oxidation
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
GO:0051903molecular_functionS-(hydroxymethyl)glutathione dehydrogenase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf308.057
SRR3591706second leaf202.183
SRR3591707mature leaf247.539
SRR3591708Shoot apex207.084
SRR3591709Stem287.456
SRR3591710White floral bud173.138
SRR3591711White flower164.587
SRR3591712Green floral bud210.169
SRR3591713Yellow flower136.626
SRP173429 SRR8316895Juvenile bud stage 144.330
SRR8316896Juvenile bud stage 199.716
SRR8316897Juvenile bud stage 97.651
SRR8316894Third green stage 82.510
SRR8316900Third green stage 263.151
SRR8316901Third green stage 243.239
SRR8316898Complete white stage 117.787
SRR8316899Complete white stage 326.614
SRR8316903Complete white stage 173.326
SRR8316902Silver flowering stage84.995
SRR8316904Silver flowering stage111.031
SRR8316905Silver flowering stage60.334
SRR8316906Gold flowering stage 169.343
SRR8316907Gold flowering stage 187.013
SRR8316908Gold flowering stage 165.318
SRP132670SRR6706286Control284.927
SRR6706287Light intensity 50%289.524
SRR6706288Light intensity 20%319.954
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1152.530
CNS0095593Slightly white alabastrum(diploid) 2156.346
CNS0095594Slightly white alabastrum(diploid) 3144.827
CNS0095595Whole white alabastrum(diploid) 2151.598
CNS0095596Whole white alabastrum(diploid) 3151.737
CNS0095597Whole white alabastrum(diploid) 4135.238
CNS0095598Silvery flower (diploied) 1231.900
CNS0095599Silvery flower (diploied) 2225.799
CNS0095600Silvery flower (diploied) 3272.918
CNS0095601Golden flower (diploid) 1223.188
CNS0095602Golden flower (diploid) 2285.458
CNS0095603Golden flower (diploid) 3266.085
CNS0095604Slightly white alabastrum(tetraploid) 1194.103
CNS0095605Slightly white alabastrum(tetraploid) 2165.670
CNS0095606Slightly white alabastrum(tetraploid) 3306.604
CNS0095607Whole white alabastrum(tetraploid) 1124.293
CNS0095608Whole white alabastrum(tetraploid) 2129.505
CNS0095609Whole white alabastrum(tetraploid) 3273.107
CNS0095610Silvery flower (tetraploid) 1266.250
CNS0095611Silvery flower (tetraploid) 2335.368
CNS0095612Silvery flower (tetraploid) 3266.223
CNS0095613Golden flower (tetraploid) 1133.404
CNS0095614Golden flower (tetraploid) 2227.993
CNS0095615Golden flower (tetraploid) 3156.365
CRA001975CRR073297Stem 1252.604
CRR073298Stem 2244.836
CRR073299Stem 3315.440
CRR073300Leaf 1276.244
CRR073301Leaf 2286.661
CRR073302Leaf 3332.378
CRR073303Juvenile bud 1385.209
CRR073304Juvenile bud 2343.549
CRR073305Juvenile bud 3389.003
CRR073306Third green 1221.812
CRR073307Third green 2197.611
CRR073308Third green 3189.825
CRR073309Second white 1305.883
CRR073310Second white 2164.758
CRR073311Second white 3134.670
CRR073312Silver flowering 1149.458
CRR073313Silver flowering 2200.689
CRR073314Silver flowering 3133.025
CRR073315Gold flowering 1242.072
CRR073316Gold flowering 2256.573
CRR073317Gold flowering 3282.870
CRR073318Tawny withering 1322.559
CRR073319Tawny withering 2255.318
CRR073320Tawny withering 3251.919